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microbializer's Introduction

The main website is under constrction. The web server was temporarily moved to:
https://tau.evolseq.net/microbializer/

A pipeline for analyzing bacterial genomic sequences. Easily.

M1CR0B1AL1Z3R (pronounced: microbializer) was developed in order to facilitate large scale microbial genomics analyses. Our goal was to make M1CR0B1AL1Z3R easily accessible to the scientific community and thus to allow handling computational challenges of analyzing dozens of bacterial genomes simultaneously. Such computations are highly demanding, and therefore, M1CR0B1AL1Z3R runs background computational processes in parallel on a high-performance computer cluster. To this end, M1CR0B1AL1Z3R enables the research community to preprocess and analyze massive genomic data that previously necessitated expensive computational infrastructure and expert knowledge. Both visual and textual results, ready for publication or downstream analysis, are given as an output. For further details see: https://microbializer.tau.ac.il/overview.html https://tau.evolseq.net/microbializer/overview.html. For running examples see: https://microbializer.tau.ac.il/gallery.html https://tau.evolseq.net/microbializer/gallery.html.

Citation

If you used M1CR0B1AL1Z3R please cite the following paper:

M1CR0B1AL1Z3R - a user-friendly web server for the analysis of large-scale microbial genomics data;

Oren Avram, Dana Rapoport, Shir Portugez, & Tal Pupko

Nucleic Acids Res, May 2019, DOI: https://doi.org/10.1093/nar/gkz423

microbializer's People

Contributors

orenavram avatar rotemb1 avatar danarapoport avatar shirportugez avatar

Stargazers

Yair Shimony avatar Dr. Karan Kumar avatar qyliang avatar UriNeri avatar Janani Ravi avatar

Watchers

James Cloos avatar  avatar Yair Shimony avatar  avatar

microbializer's Issues

Bad stylesheet link in result page

Hi, thanks for the tool!

The following line calls for a stylesheet but links to a location that doesn't exist, and this results in error 200 when the browser is trying to load the results page:

<link rel="stylesheet" href="../webpage/css/general.css">

I think this line can be safely removed.

(on a side note, a refresh of 5 seconds is too fast and probably results in a heavy load on your servers. I'd suggest for a 30sec refresh interval)

Improve README.md

Hi, I tried to run your project locally, but I had so many problems with it and finally gave up. Could you please add instructions on how to run the program properly? E.g. version of python, version of libraries and step by step what commands to type and what to change in files like "CONSTANTS". Also why do you have imports from libraries which doesn't exist in PyPI?

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