This repository explores a graph of research papers released during COVID-19 Open Research Dataset Challenge (CORD-19)
This repository does not participate in the challenge, but aims to help researchers and scientists find top papers in the data set.
Below are
- 100 most cited papers
- 100 papers with the highest PageRank
- Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia - 422
- Identification of a novel coronavirus in patients with severe acute respiratory syndrome - 246
- A novel coronavirus associated with severe acute respiratory syndrome - 232
- Global trends in emerging infectious diseases - 208
- Bats are natural reservoirs of SARS-like coronaviruses - 189
- Coronavirus as a possible cause of severe acute respiratory syndrome - 164
- Characterization of a novel coronavirus associated with severe acute respiratory syndrome - 153
- Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats - 148
- Identification of a new human coronavirus - 143
- Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC - 142
- Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans - 130
- Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China - 130
- Basic local alignment search tool - 129
- Transmission dynamics and control of severe acute respiratory syndrome - 126
- Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia - 126
- MUSCLE: multiple sequence alignment with high accuracy and high throughput - 125
- Cloning of a human parvovirus by molecular screening of respiratory tract samples - 123
- Hospital outbreak of Middle East respiratory syndrome coronavirus - 122
- Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor - 118
- World Health Organization - 113
- A new coronavirus-like particle associated with diarrhea in swine - 109
- A major outbreak of severe acute respiratory syndrome in Hong Kong - 108
- Different epidemic curves for severe acute respiratory syndrome reveal similar impacts of control measures - 106
- Middle East respiratory syndrome - 105
- Fruit bats as reservoirs of Ebola virus - 105
- The molecular biology of coronaviruses - 104
- Severe acute respiratory syndrome - 103
- Clinical features of patients infected with 2019 novel coronavirus in Wuhan - 102
- Superspreading and the effect of individual variation on disease emergence - 101
- Epidemiological, demographic, and clinical characteristics of 47 cases of Middle East respiratory syndrome coronavirus disease from Saudi Arabia: a descriptive study - 101
- Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: a comparative serological study - 101
- Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study - 99
- Bats: important reservoir hosts of emerging viruses - 98
- Evidence for camel-to-human transmission of MERS coronavirus - 95
- Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation - 95
- The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus - 95
- Epidemiological determinants of spread of causal agent of severe acute respiratory syndrome in Hong Kong - 94
- Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia - 93
- Risk factors for human disease emergence - 92
- MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods - 92
- Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus - 88
- Evolution and ecology of influenza A viruses - 88
- Porcine epidemic diarrhoea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines - 88
- Coronavirus avian infectious bronchitis virus - 86
- Strategies for containing an emerging influenza pandemic in Southeast Asia - 85
- Human infection with a novel avian-origin influenza A (H7N9) virus - 82
- Detection of a novel human coronavirus by real-time reverse-transcription polymerase chain reaction - 81
- A newly discovered human pneumovirus isolated from young children with respiratory tract disease - 81
- Distinct patterns of IFITM-mediated restriction of filoviruses, SARS coronavirus, and influenza A virus - 80
- A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster - 79
- Middle East respiratory syndrome coronavirus infection in dromedary camels in Saudi Arabia - 79
- Identification of severe acute respiratory syndrome in Canada - 79
- Pandemic potential of a strain of influenza A (H1N1): early findings - 78
- Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study - 77
- A diverse range of gene products are effectors of the type I interferon antiviral response - 77
- Middle East respiratory syndrome coronavirus in bats, Saudi Arabia - 77
- Antibodies against MERS coronavirus in dromedary camels - 76
- A pneumonia outbreak associated with a new coronavirus of probable bat origin - 75
- Coronaviruses post-SARS: update on replication and pathogenesis - 75
- Family cluster of Middle East respiratory syndrome coronavirus infections - 75
- The severe acute respiratory syndrome - 74
- Viral pneumonia - 74
- Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage - 73
- Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26 - 73
- Loop-mediated isothermal amplification of DNA - 72
- SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum - 72
- How generation intervals shape the relationship between growth rates and reproductive numbers - 71
- A simple method of estimating fifty per cent endpoints - 71
- Origin, evolution, and genotyping of emergent porcine epidemic diarrhea virus strains in the United States - 71
- Mfold web server for nucleic acid folding and hybridization prediction - 70
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs - 70
- A simple method of estimating fifty percent endpoints - 70
- Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt - 70
- Middle East respiratory syndrome coronavirus (MERS-CoV): announcement of the Coronavirus Study Group - 69
- The copyright holder for this preprint (which was not peer-reviewed) is the author/funder - 68
- Fields Virology - 67
- An efficient method to make human monoclonal antibodies from memory B cells: potent neutralization of SARS coronavirus - 67
- IFITM3 restricts the morbidity and mortality associated with influenza - 67
- Host range and emerging and reemerging pathogens - 66
- Severe respiratory illness caused by a novel coronavirus - 66
- Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4 - 65
- A Novel Coronavirus from Patients with Pneumonia in China - 64
- Strategies for mitigating an influenza pandemic - 64
- Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis - 63
- Coot: model-building tools for molecular graphics - 63
- The global distribution and burden of dengue - 63
- Factors that make an infectious disease outbreak controllable - 62
- Fast gapped-read alignment with Bowtie 2 - 61
- Clustal W and Clustal X version 2.0 - 61
- Assays for laboratory confirmation of novel human coronavirus (hCoV-EMC) infections - 61
- A cluster of cases of severe acute respiratory syndrome in Hong Kong - 60
- Clinical features and virological analysis of a case of Middle East respiratory syndrome coronavirus infection - 60
- Coronavirus diversity, phylogeny and interspecies jumping - 60
- Transmission of MERS-coronavirus in household contacts - 60
- MEGA6: molecular evolutionary genetics analysis version 6.0 - 59
- Emergence of a novel swine-origin influenza A (H1N1) virus in humans - 59
- Endosomal proteolysis of the Ebola virus glycoprotein is necessary for infection - 59
- The genome sequence of the SARS-associated coronavirus - 58
- Isolation and characterization of porcine epidemic diarrhea viruses associated with the 2013 disease outbreak among swine in the United States - 58
- Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study - 57
- Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia - 0.000030214273580887554
- A novel coronavirus associated with severe acute respiratory syndrome - 0.000017851516003512185
- Identification of a novel coronavirus in patients with severe acute respiratory syndrome - 0.00001778469801970066
- Coronavirus as a possible cause of severe acute respiratory syndrome - 0.000013696721148887258
- Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia - 0.000013634041139832885
- Clinical features of patients infected with 2019 novel coronavirus in Wuhan - 0.000012842491017243939
- Global trends in emerging infectious diseases - 0.00001182368859219638
- Bats are natural reservoirs of SARS-like coronaviruses - 0.000011819467230975972
- A Novel Coronavirus from Patients with Pneumonia in China - 0.000011757534664161738
- Transmission dynamics and control of severe acute respiratory syndrome - 0.000011519771727110827
- A major outbreak of severe acute respiratory syndrome in Hong Kong - 0.000011342285012659375
- World Health Organization - 0.00001104666096924675
- Hospital outbreak of Middle East respiratory syndrome coronavirus - 0.000010981291080537561
- A new coronavirus-like particle associated with diarrhea in swine - 0.00001077198725204711
- Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study - 0.00001074176644367653
- Middle East respiratory syndrome - 0.000010585742112134148
- Characterization of a novel coronavirus associated with severe acute respiratory syndrome - 0.000010554979635345487
- A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster - 0.000010351237167486713
- Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study - 0.000009957987891039725
- Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: a comparative serological study - 0.00000991905869482425
- Cloning of a human parvovirus by molecular screening of respiratory tract samples - 0.000009858613809020958
- A pneumonia outbreak associated with a new coronavirus of probable bat origin - 0.000009769927957405335
- Porcine epidemic diarrhoea virus: a comprehensive review of molecular epidemiology, diagnosis, and vaccines - 0.000009678630222204843
- Epidemiological determinants of spread of causal agent of severe acute respiratory syndrome in Hong Kong - 0.000009636481211101517
- Detection of a novel human coronavirus by real-time reverse-transcription polymerase chain reaction - 0.000009530182643695209
- Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China - 0.00000951707628096151
- Identification of a new human coronavirus - 0.00000936263247963982
- Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation - 0.00000925037192813049
- Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans - 0.000009245242954069329
- Epidemiological, demographic, and clinical characteristics of 47 cases of Middle East respiratory syndrome coronavirus disease from Saudi Arabia: a descriptive study - 0.00000906832747661447
- Identification of severe acute respiratory syndrome in Canada - 0.000008997075541369225
- Different epidemic curves for severe acute respiratory syndrome reveal similar impacts of control measures - 0.000008974560331460351
- Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats - 0.000008947824534547954
- Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC - 0.000008880872935326923
- Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia - 0.000008873571873919721
- MUSCLE: multiple sequence alignment with high accuracy and high throughput - 0.000008645760841476574
- Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study - 0.000008624439877568346
- Superspreading and the effect of individual variation on disease emergence - 0.000008611447270746965
- Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China - 0.000008547843027717236
- Basic local alignment search tool - 0.000008227838940488223
- Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor - 0.000007903328147367947
- A novel coronavirus from patients with pneumonia in China - 0.000007796454578505519
- Factors that make an infectious disease outbreak controllable - 0.000007584831675029194
- Assays for laboratory confirmation of novel human coronavirus (hCoV-EMC) infections - 0.000007536467730729938
- No reuse allowed without permission. The copyright holder for this preprint (which was not peer-reviewed) is the - 0.00000749193057354163
- Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding - 0.000007456373525659563
- Evidence for camel-to-human transmission of MERS coronavirus - 0.00000744971136441726
- Seroepidemiology for MERS coronavirus using microneutralisation and pseudoparticle virus neutralisation assays reveal a high prevalence of antibody in dromedary camels in Egypt - 0.000007419974056741979
- Family cluster of Middle East respiratory syndrome coronavirus infections - 0.000007413875852229176
- A novel coronavirus outbreak of global health concern - 0.0000074055758714005645
- Bats: important reservoir hosts of emerging viruses - 0.0000073470214154087844
- Origin, evolution, and genotyping of emergent porcine epidemic diarrhea virus strains in the United States - 0.000007344909703336689
- Severe acute respiratory syndrome - 0.000007273972424495137
- MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods - 0.000007256752860092913
- A cluster of cases of severe acute respiratory syndrome in Hong Kong - 0.00000722833124375235
- Transmission of MERS-coronavirus in household contacts - 0.0000071810619117285815
- Antibodies against MERS coronavirus in dromedary camels - 0.000007160449132517955
- MERS outbreak in Korea: hospital-to-hospital transmission - 0.000007064667911333143
- Early transmission dynamics in Wuhan, China, of novel coronavirus-infected pneumonia - 0.000007028691985167885
- Middle East respiratory syndrome coronavirus infection in dromedary camels in Saudi Arabia - 0.000006976024301505739
- Pandemic potential of a strain of influenza A (H1N1): early findings - 0.0000068848028647450815
- How generation intervals shape the relationship between growth rates and reproductive numbers - 0.000006847368756742034
- Emergence of porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences - 0.000006767342733403059
- Isolation and characterization of porcine epidemic diarrhea viruses associated with the 2013 disease outbreak among swine in the United States - 0.000006725233762989542
- Human infection with a novel avian-origin influenza A (H7N9) virus - 0.0000066450909351996185
- Coronavirus avian infectious bronchitis virus - 0.000006625072292783845
- Risk factors for human disease emergence - 0.000006615979322983559
- A newly discovered human pneumovirus isolated from young children with respiratory tract disease - 0.000006538503882594968
- Proc. Natl. Acad. Sci - 0.0000065370681680189255
- Strategies for containing an emerging influenza pandemic in Southeast Asia - 0.000006516995307023328
- The severe acute respiratory syndrome - 0.000006512961554483116
- Middle East respiratory syndrome coronavirus (MERS-CoV): announcement of the Coronavirus Study Group - 0.000006512166415418912
- MERS coronaviruses in dromedary camels - 0.000006507620398347028
- Clinical features and short-term outcomes of 144 patients with SARS in the greater Toronto area - 0.000006421905408260493
- The molecular biology of coronaviruses - 0.000006326788211471908
- Proc. Natl Acad. Sci. USA - 0.0000062823861275022985
- Fruit bats as reservoirs of Ebola virus - 0.000006228691692423214
- Loop-mediated isothermal amplification of DNA - 0.000006217201167025759
- MEGA6: molecular evolutionary genetics analysis version 6.0 - 0.000006197643458896986
- Outbreak of porcine epidemic diarrhea in suckling piglets - 0.000006185916941482974
- Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus - 0.000006155203733440755
- Clinical characteristics of 2019 novel coronavirus infection in China - 0.000006105420038098192
- Middle East respiratory syndrome coronavirus in bats, Saudi Arabia - 0.000006033628556917748
- Severe respiratory illness caused by a novel coronavirus - 0.0000060248395698908535
- Evidence of human coronavirus HKU1 and human bocavirus in Australian children - 0.000005978414011847801
- Transmission dynamics of the etiological agent of SARS in Hong Kong: impact of public health interventions - 0.000005921730074933322
- Distinct characteristics and complex evolution of PEDV strains - 0.0000059081228759718215
- The genome sequence of the SARS-associated coronavirus - 0.000005817842731262006
- Viral pneumonia - 0.000005730198017290083
- Effectiveness of precautions against droplets and contact in prevention of nosocomial transmission of severe acute respiratory syndrome (SARS) - 0.00000572998627863784
- The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus - 0.0000056940635906927955
- License statement: This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes - 0.0000056806211589341725
- Preliminary epidemiological assessment of MERS-CoV outbreak in South Korea - 0.000005642895169745001
- Interhuman transmissibility of Middle East respiratory syndrome coronavirus: estimation of pandemic risk - 0.000005622208427863623
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs - 0.0000056187397882373115
- Emergence of Porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences - 0.0000055994227189676705
- Infectious diseases of humans - 0.000005547080507808995
- Evolution and ecology of influenza A viruses - 0.000005528221342988328
- Global burden of childhood pneumonia and diarrhoea - 0.00000552404759957462
- Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4 - 0.000005518633891110089
- Download the dataset.
- Install node
And then perform one-time initialization
git clone https://github.com/anvaka/cord-19
cd cord-19
npm install
Once all modules are installed, run the command to collect stats:
node print-stats.js path_to_kaggle_data_set
Here path_to_kaggle_data_set
is the root folder with json_schema.txt
file in it. E.g.:
node print-stats.js ~/Downloads/2020-03-13
Code in this repository is licensed under MIT license.
By accessing, downloading or otherwise using any Journals, Articles, Metadata, Abstracts, Full-Texts or any other content types provided in the COVID-19 Open Research Dataset (CORD-19) Database (the “Data”), You expressly acknowledge and agree to the following:
- AI2 grants to You a worldwide, perpetual, non-exclusive, non-transferable license to use and make derivatives of the Data for text and data mining only.
- AI2 warrants that it has the right to make the Data available to You as provided for in and subject to this Agreement and in accordance with applicable law. EXCEPT FOR THE LIMITED WARRANTY IN THIS SECTION, THE DATA IS PROVIDED “AS IS”, WITHOUT ANY WARRANTIES OF ANY KIND.
- You agree to comply with all applicable local, state, national, and international laws and regulations with respect to AI2’s license and Your use of the Data.
- Data provided by AI2 is from copyrighted sources of the respective copyright holders. You are solely responsible for Your and Your users’ compliance with any copyright, patent or trademark restrictions and are referred to the copyright, patent or trademark notices appearing in the original sources, all of which are hereby incorporated by reference.