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sbooeshaghi avatar sbooeshaghi commented on August 23, 2024

Please fix the spec (making the modalities unique) using the new spec that contains dna as a controlled vocabulary. Please let me know if you still encounter issues once you've done that.

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sbooeshaghi avatar sbooeshaghi commented on August 23, 2024

I've updated seqspec check to now report errors contained in your spec. In particular:

[error 1] modalities [rna, rna, rna] are not unique
[error 2] region_id 'assignment' of the first level of the spec does not correspond to a modality [rna, rna, rna]
[error 3] region_id 'dna_count_library' of the first level of the spec does not correspond to a modality [rna, rna, rna]
[error 4] region_id 'rna_count_library' of the first level of the spec does not correspond to a modality [rna, rna, rna]
...

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sbooeshaghi avatar sbooeshaghi commented on August 23, 2024

Hi, can you verify for me if this worked for you?

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sbooeshaghi avatar sbooeshaghi commented on August 23, 2024

Going to close this due to inactivity. Please feel free to reopen if you continue to have issues.

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