Comments (3)
Hi @johanneskoester I will be making an initial release of both the spec and the tool imminently. I am working with various groups to ensure that the current version of the specification is sufficiently defined to satisfy the needs multiple data types within the IGVF consortium, as well as flexible enough to adopt to future use-cases.
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Done.
https://pypi.org/project/seqspec/0.1.0/
from seqspec.
Here is the official github release
https://github.com/pachterlab/seqspec/releases/tag/v0.1.1
I bumped to v0.1.1 so pypi also reflects that as well
https://pypi.org/project/seqspec/0.1.1/
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Related Issues (20)
- PIP-seq HOT 5
- Print not working on Windows HOT 3
- Linker is not a region_type HOT 1
- speck check is allowing different region_type HOT 1
- read seqspec from URI HOT 9
- add "requests" package as dependency?
- missing support for custom read primer definition HOT 6
- 10x-RNA-v3 barcode file HOT 3
- DNA for modalities HOT 3
- getting not unique across all regions error but region_id is unique HOT 4
- format chromap potentially is not deterministic as python set() does not have a guaranteed order, HOT 1
- index string should take into account strand information HOT 3
- getting an unexpected keyword argument error in seqspec init HOT 2
- With a seqspec that has only one modality it seems like the library png plot is too short.
- source file for pypi HOT 1
- Feature request: grouping of sequencing runs HOT 2
- using region.max_len for format and check is a problem for nanopore reads HOT 1
- seqspec split error HOT 1
- predefined `sequence_protocol`
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