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metincansiper avatar metincansiper commented on June 26, 2024

@maxkfranz Should all of the organizms be enabled with no check at all? Or only the ones supported by factoid (https://github.com/PathwayCommons/factoid/blob/master/src/model/organism.js#L59) must be enabled (I am actually not sure if the factoid already support all organisms)?

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maxkfranz avatar maxkfranz commented on June 26, 2024

Let's start with just the list that Factoid supports.

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metincansiper avatar metincansiper commented on June 26, 2024

Okay, I did so. Looks like nothing is broken after the related commit.

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metincansiper avatar metincansiper commented on June 26, 2024

However, as far as I can understand these organism ids are not specific to uniprot. If that is true it would make sense if I move supported organism ids list to a more general file from the uniprot file.

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maxkfranz avatar maxkfranz commented on June 26, 2024

Yes, they're taxon ids -- which are not specific to uniprot.

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metincansiper avatar metincansiper commented on June 26, 2024

Okay, thanks. I updated as I mentioned.

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