Giter VIP home page Giter VIP logo

onekp's Introduction

Onekp Utility

Filtering and Fetching Onekp data from Gigadb

Show Metadata

Show Liverworts and Mosses metadata

onekp metadata --filter-key clade --filter-values Liverworts,Mosses
WOGB    Mosses  Andreaeales     Andreaeaceae    Andreaea rupestris      gametophyte, tip of shoots, possibly some developi
ORKS    Mosses  Bartramiales    Bartramiaceae   Philonotis fontana      gametophyte
...
HERT    Liverworts      Sphaerocarpales Sphaerocarpaceae        Sphaerocarpos texanus   gametophyte, possibly some sporophytic tissue
FITN    Liverworts      Treubiales      Treubiaceae     Treubia lacunosa        whole plant

Fetch fasta files

Retrive by IDs

onekp fetch --filter-key id --filter-values URDJ,WTKZ -s both -r .

Batch download

Download protein and cds sequences of Liverworts and Mosses

onekp fetch --filter-key clade --filter-values Liverworts,Mosses --sequence-type both --root-dir .

Show Key data

onekp show -k clade

Basal Eudicots
Basalmost angiosperms
Chloranthales
Chromista (Algae)
Conifers
Core Eudicots
Core Eudicots/Asterids
Core Eudicots/Rosids
Cycadales
Dinophyceae
Euglenozoa
Eusporangiate Monilophytes
Ginkgoales
Glaucophyta (Algae)
Gnetales
Green Algae
Hornworts
Leptosporangiate Monilophytes
Liverworts
Lycophytes
Magnoliids
Monocots
Monocots/Commelinids
Mosses
Red Algae

onekp's People

Contributors

illumination-k avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.