phanigaddipati / dvd-hit Goto Github PK
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The next generation of CD-HIT (maybe)
Or optionally, just have it as a CLI option for the main program.
When comparing clustering results, we need to read the *.clstr file from CD-HIT's results and out results. The resulting List will have Clusters, each of which contains a list of Sequence objects. However, since the *.clstr file doesn't actually contain the sequences, only the Name fields will be populated, which is all we need to compare clustering results.
See writeClstrFile and here for the clstr file format. We don't compute the similarity so our files don't have the "at +/90%".
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