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View Code? Open in Web Editor NEWGATE plugin to identify chemical term and drug term mentions
GATE plugin to identify chemical term and drug term mentions
Copyright (c) 2012, Phil Gooch. This software is licenced under the GNU Library General Public License, http://www.gnu.org/copyleft/gpl.html Version 3, 29 June 2007 MiniChemDrugTagger uses a small set (~500) of chemistry morphemes classified into 10 types (root, suffix, multiplier etc), and some deterministic rules based on the Wikipedia IUPAC entries, to identify chemical names, drug names and chemical formula in text. This plugin processes Tokens and Sentences in the document, so be sure to add a Tokenizer and Sentence Splitter to your pipeline prior to adding this component. Parameters ========== Init-time ---------- configFileURL: Location of configuration file that lists the morpheme lookup files japeURL: Location of JAPE grammar file. minPrefixLength: Minimum number of characters prefixing a suffix to trigger a suffix-only match Run-time --------- organicChemType: Output annotation type for organic molecule mentions inorganicChemType: Output annotation type for inorganic molecule mentions inputASName: Input annotation set name drugType: Output annotation type for drug mentions outputASName: Output annotation set name sentenceType: Annotation type for Sentence annotations. Defaults to Sentence.
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