I'm a PhD student in Cambridge working on computational methods to design broad-spectrum vaccines and antibodies
philpalmer Goto Github PK
Type: User
Bio: PhD Student & Bioinformatician
Location: Cambridge, UK
Type: User
Bio: PhD Student & Bioinformatician
Location: Cambridge, UK
R Markdown for Understanding the Common Mechanism and Suggestions for Improvement
This side project was done for a PhD application research proposal as a proof of concept
Code for Attentive cross-modal paratope prediction
RShiny app to automate the analysis of 96-well plates such as the fitting of dose-response curves for Pseduotype Micro Neutralisation (pMN) assays
Back-of-the-envelope calculations (BOTECs) assessing different pandemic risks
Analysis of trends in biosecurity
My personal homepage built using the Hugo Academic Theme
GATK RNA-Seq Variant Calling in Nextflow
Pipeline for automatic eukaryotic parasite annotation
Config files used to define parameters specific to compute environments at different Institutions
Bioinformatics containers
[LaTeX] My academic CV
My curriculum vitae (CV) written using LaTeX.
Nextflow pipeline to download files using axel
Google's DeepVariant variant caller as a Nextflow pipeline
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Identifying viruses from metagenomic data by deep learning
Notes for everything I know
A command line tool to go between 23andMe, AncestryDNA, and Family Tree DNA raw data formats.
WORK IN PROGRESS: Hopefully soon a fully reproducible and modern ancient DNA pipeline in Nextflow and with cloud support.
Dockerised python scripts & Nextflow pipeline for converting ecw files to either geotiffs or Cloud Optimised Geotiffs (COGs)
A Bpipe pipeline for easily running ExomeDepth
Detects copy number variants in exomes and gene panels using high throughput DNA sequencing data
A tool for estimating repeat sizes
Testing pipeline built with flowcraft
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.