Hi! I am running into a segmentation fault. Why might this be happening?
Here is the infer.status.txt file:
Reading in genome coverage from "/mnt/CT432.bam" ...
New chromosome chr1, length=248956422, window size=500, no_of_windows=497913.
59661040 reads so far for "/mnt/CT432.bam". Chromosome chr1 contains 0 valid fragments.
New chromosome chr10, length=133797422, window size=500, no_of_windows=267595.
81042310 reads so far for "/mnt/CT432.bam". Chromosome chr10 contains 0 valid fragments.
New chromosome chr11, length=135086622, window size=500, no_of_windows=270174.
110417527 reads so far for "/mnt/CT432.bam". Chromosome chr11 contains 0 valid fragments.
New chromosome chr12, length=133275309, window size=500, no_of_windows=266551.
139816736 reads so far for "/mnt/CT432.bam". Chromosome chr12 contains 0 valid fragments.
New chromosome chr13, length=114364328, window size=500, no_of_windows=228729.
161439829 reads so far for "/mnt/CT432.bam". Chromosome chr13 contains 0 valid fragments.
New chromosome chr14, length=107043718, window size=500, no_of_windows=214088.
181255065 reads so far for "/mnt/CT432.bam". Chromosome chr14 contains 0 valid fragments.
New chromosome chr15, length=101991189, window size=500, no_of_windows=203983.
199363069 reads so far for "/mnt/CT432.bam". Chromosome chr15 contains 0 valid fragments.
New chromosome chr16, length=90338345, window size=500, no_of_windows=180677.
218150818 reads so far for "/mnt/CT432.bam". Chromosome chr16 contains 0 valid fragments.
New chromosome chr17, length=83257441, window size=500, no_of_windows=166515.
235637677 reads so far for "/mnt/CT432.bam". Chromosome chr17 contains 0 valid fragments.
New chromosome chr18, length=80373285, window size=500, no_of_windows=160747.
253134738 reads so far for "/mnt/CT432.bam". Chromosome chr18 contains 0 valid fragments.
New chromosome chr19, length=58617616, window size=500, no_of_windows=117236.
265860905 reads so far for "/mnt/CT432.bam". Chromosome chr19 contains 0 valid fragments.
New chromosome chr2, length=242193529, window size=500, no_of_windows=484388.
319870334 reads so far for "/mnt/CT432.bam". Chromosome chr2 contains 0 valid fragments.
New chromosome chr20, length=64444167, window size=500, no_of_windows=128889.
333674604 reads so far for "/mnt/CT432.bam". Chromosome chr20 contains 0 valid fragments.
New chromosome chr21, length=46709983, window size=500, no_of_windows=93420.
343433771 reads so far for "/mnt/CT432.bam". Chromosome chr21 contains 0 valid fragments.
New chromosome chr22, length=50818468, window size=500, no_of_windows=101637.
351723849 reads so far for "/mnt/CT432.bam". Chromosome chr22 contains 0 valid fragments.
New chromosome chr3, length=198295559, window size=500, no_of_windows=396592.
396184917 reads so far for "/mnt/CT432.bam". Chromosome chr3 contains 0 valid fragments.
New chromosome chr4, length=190214555, window size=500, no_of_windows=380430.
441143709 reads so far for "/mnt/CT432.bam". Chromosome chr4 contains 0 valid fragments.
New chromosome chr5, length=181538259, window size=500, no_of_windows=363077.
482509996 reads so far for "/mnt/CT432.bam". Chromosome chr5 contains 0 valid fragments.
New chromosome chr6, length=170805979, window size=500, no_of_windows=341612.
518332470 reads so far for "/mnt/CT432.bam". Chromosome chr6 contains 0 valid fragments.
New chromosome chr7, length=159345973, window size=500, no_of_windows=318692.
562631614 reads so far for "/mnt/CT432.bam". Chromosome chr7 contains 0 valid fragments.
New chromosome chr8, length=145138636, window size=500, no_of_windows=290278.
594804392 reads so far for "/mnt/CT432.bam". Chromosome chr8 contains 0 valid fragments.
New chromosome chr9, length=138394717, window size=500, no_of_windows=276790.
653668784 reads so far for "/mnt/CT432.bam". Chromosome chr9 contains 0 valid fragments.
Reading and smoothing of coverage from "/mnt/CT432.bam" is Done. 22 unique chromosomes, 653668784 reads.
Genome wide mean coverage is 0
Reading in genome coverage from "/mnt/CT434.bam" ...
New chromosome chr1, length=248956422, window size=500, no_of_windows=497913.
21543443 reads so far for "/mnt/CT434.bam". Chromosome chr1 contains 0 valid fragments.
New chromosome chr10, length=133797422, window size=500, no_of_windows=267595.
33519753 reads so far for "/mnt/CT434.bam". Chromosome chr10 contains 0 valid fragments.
New chromosome chr11, length=135086622, window size=500, no_of_windows=270174.
45224913 reads so far for "/mnt/CT434.bam". Chromosome chr11 contains 0 valid fragments.
New chromosome chr12, length=133275309, window size=500, no_of_windows=266551.
57193479 reads so far for "/mnt/CT434.bam". Chromosome chr12 contains 0 valid fragments.
New chromosome chr13, length=114364328, window size=500, no_of_windows=228729.
65967040 reads so far for "/mnt/CT434.bam". Chromosome chr13 contains 0 valid fragments.
New chromosome chr14, length=107043718, window size=500, no_of_windows=214088.
73940039 reads so far for "/mnt/CT434.bam". Chromosome chr14 contains 0 valid fragments.
New chromosome chr15, length=101991189, window size=500, no_of_windows=203983.
81214655 reads so far for "/mnt/CT434.bam". Chromosome chr15 contains 0 valid fragments.
New chromosome chr16, length=90338345, window size=500, no_of_windows=180677.
88145461 reads so far for "/mnt/CT434.bam". Chromosome chr16 contains 0 valid fragments.
New chromosome chr17, length=83257441, window size=500, no_of_windows=166515.
95287511 reads so far for "/mnt/CT434.bam". Chromosome chr17 contains 0 valid fragments.
New chromosome chr18, length=80373285, window size=500, no_of_windows=160747.
102166467 reads so far for "/mnt/CT434.bam". Chromosome chr18 contains 0 valid fragments.
New chromosome chr19, length=58617616, window size=500, no_of_windows=117236.
106899655 reads so far for "/mnt/CT434.bam". Chromosome chr19 contains 0 valid fragments.
New chromosome chr2, length=242193529, window size=500, no_of_windows=484388.
128578844 reads so far for "/mnt/CT434.bam". Chromosome chr2 contains 0 valid fragments.
New chromosome chr20, length=64444167, window size=500, no_of_windows=128889.
133963433 reads so far for "/mnt/CT434.bam". Chromosome chr20 contains 0 valid fragments.
New chromosome chr21, length=46709983, window size=500, no_of_windows=93420.
137937298 reads so far for "/mnt/CT434.bam". Chromosome chr21 contains 0 valid fragments.
New chromosome chr22, length=50818468, window size=500, no_of_windows=101637.
141126722 reads so far for "/mnt/CT434.bam". Chromosome chr22 contains 0 valid fragments.
New chromosome chr3, length=198295559, window size=500, no_of_windows=396592.
159234832 reads so far for "/mnt/CT434.bam". Chromosome chr3 contains 0 valid fragments.
New chromosome chr4, length=190214555, window size=500, no_of_windows=380430.
177053732 reads so far for "/mnt/CT434.bam". Chromosome chr4 contains 0 valid fragments.
New chromosome chr5, length=181538259, window size=500, no_of_windows=363077.
193446228 reads so far for "/mnt/CT434.bam". Chromosome chr5 contains 0 valid fragments.
New chromosome chr6, length=170805979, window size=500, no_of_windows=341612.
209476810 reads so far for "/mnt/CT434.bam". Chromosome chr6 contains 0 valid fragments.
New chromosome chr7, length=159345973, window size=500, no_of_windows=318692.
223320566 reads so far for "/mnt/CT434.bam". Chromosome chr7 contains 0 valid fragments.
New chromosome chr8, length=145138636, window size=500, no_of_windows=290278.
236709378 reads so far for "/mnt/CT434.bam". Chromosome chr8 contains 0 valid fragments.
New chromosome chr9, length=138394717, window size=500, no_of_windows=276790.
263020395 reads so far for "/mnt/CT434.bam". Chromosome chr9 contains 0 valid fragments.
Reading and smoothing of coverage from "/mnt/CT434.bam" is Done. 22 unique chromosomes, 263020395 reads.
Genome wide mean coverage is 0
Outputting normalized coverage ratio of chr1 ... Output done.
Outputting normalized coverage ratio of chr2 ... Output done.
Outputting normalized coverage ratio of chr3 ... Output done.
Outputting normalized coverage ratio of chr4 ... Output done.
Outputting normalized coverage ratio of chr5 ... Output done.
Outputting normalized coverage ratio of chr6 ... Output done.
Outputting normalized coverage ratio of chr7 ... Output done.
Outputting normalized coverage ratio of chr8 ... Output done.
Outputting normalized coverage ratio of chr9 ... Output done.
Outputting normalized coverage ratio of chr10 ... Output done.
Outputting normalized coverage ratio of chr11 ... Output done.
Outputting normalized coverage ratio of chr12 ... Output done.
Outputting normalized coverage ratio of chr13 ... Output done.
Outputting normalized coverage ratio of chr14 ... Output done.
Outputting normalized coverage ratio of chr15 ... Output done.
Outputting normalized coverage ratio of chr16 ... Output done.
Outputting normalized coverage ratio of chr17 ... Output done.
Outputting normalized coverage ratio of chr18 ... Output done.
Outputting normalized coverage ratio of chr19 ... Output done.
Outputting normalized coverage ratio of chr20 ... Output done.
Outputting normalized coverage ratio of chr21 ... Output done.
Outputting normalized coverage ratio of chr22 ... Output done.
program name is /usr/local/Accucopy/GADA.
Reading data from /mnt/output_CT432_CT434/chr14.ratio.w500.csv.gz ... program name is /usr/local/Accucopy/GADA.
Reading data from /mnt/output_CT432_CT434/chr22.ratio.w500.csv.gz ... 0 data points for chromosome chr14.
Running SBLandBE ...
0 data points for chromosome chr22.
Running SBLandBE ...