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pneumonia_detection's Introduction

Pneumonia Detection From Chest X-Rays

Pneumonia causes the death of around 700,000 children every year and affects 7% of the global population. Chest X-rays are primarily used for the diagnosis of this disease. However, even for a trained radiologist, it is a challenging task to examine chest X-rays and diagnose disease correctly.

In this project, I will analyze data from the NIH Chest X-ray Dataset and train a CNN model to classify a given chest x-ray for the presence or absence of pneumonia. This project will culminate in a model that aims to predict the presence of pneumonia with human radiologist-level accuracy that can be prepared for submission to the FDA for 510(k) clearance as software as a medical device. As part of the submission preparation, I will formally describe my model, the data that it was trained on, and a validation plan that meets FDA criteria.

The project uses a dataset of 112,000 chest x-rays with disease labels acquired from 30,000 patients.

Example Chest X-Rays of patients with and without Pneumonia

pneumonia examples

Project highlights

  • Use imaging modalities for common clinical applications of 2D medical imaging
  • Perform exploratory data analysis (EDA) on medical imaging data to inform model training and explain model performance
  • Establish the appropriate ‘ground truth’ methodologies for training algorithms to label medical images
  • Extract images from a DICOM medical format dataset
  • Train common CNN deep learning architectures to classify 2D medical images
  • Translate outputs of medical imaging models for use by a clinician
  • Plan necessary validations to prepare a medical imaging model for regulatory approval

Key files

June 2020

Results

  1. In the first project finished in June 2020, the best result was an accuracy for predicting Pneumonia of 0.83

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