Peter St. John's Projects
Source files for the August 15th ABF software seminar on `cobrapy`
Code for Advent of Code 2020 challenges
Repository to host binary data files for alfabet models
Open source code for AlphaFold.
A conda-smithy repository for ampl-mp.
rust solutions for AOC 2023
utilities for calculating bond dissociation energies
Code and data to replicate the figures in doi:10.26434/chemrxiv.10052048
Dockerized web service for serving tensorflow 2 BDE predictions
BDE prediction using tensorflow 2.x
A Keras TensorFlow 2.0 implementation of BERT, ALBERT and adapter-BERT.
A conda-smithy repository for casadi.
Parsers and algorithms for computational chemistry logfiles
python source files used to generate manuscript figures
Method files for the analysis of circadian rhythms
COBRApy is a package for constraints-based modeling of biological networks
opencobra.github.io/cobrapy
Mockup for the new cobrapy website
A package to use casadi for collocation-based system identification
Work in progress on graph neural networks for crystal energy prediction
vue3 cv/resume served at pcstj.com/cv
D3.js based visualizations of cobrapy metabolic models
Latex source files for an upcoming manuscript on damping rates in circadian rhythms
Code and data files for an upcoming manuscript on the damping rate of circadian oscillations
Dynamic Flux Balance analysis in Python