pyushkevich Goto Github PK
Name: Paul Yushkevich
Type: User
Company: University of Pennsylvania
Location: Philadelphia
Paul Yushkevich's Projects
greedy
Very fast greedy diffeomorphic registration code
histoannot
online histology annotation webapp
image-graph-cut
A utility to apply METIS graph partitioning to binary images
itksnap
ITK-SNAP medical image segmentation tool
itksnap-cdash
Build bot for ITK-SNAP and related
itksnap-www
itksnap.org website
longxiepatchsuperresolution
Long's code for Patch super-resolution based on Jose Manjon's code
medicalzoopytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
mesh3d
Mesh3D is a command-line tool for mesh manipulation, like C3D for meshes
mold_helper
Helper scripts for creating cutting molds
mtl_exvivo_shooting_template
Scripts for building an ex vivo medial temporal lobe template
mtlextraction
Creates 3D printed molds to guide the extraction of the medial temporal lobe of an hemisphere.
my_little_dss_test
nein2018_stats
Statistical analysis for the 2018 Neuroinformatics paper on ITK-SNAP
paulytools
A collection of various image processing tools - mostly old code
picsl-dss-k8s-server
Kubernetes orchestration for DSS services from PICSL
picslbib
PICSL lab bibliography
pointsetreg
Simple point set registration code used in ASHS
posts
Nbviewer posts
pwreg
Patch-wise registration (2D)
pytorch-cmrep
Just screwing around with autodiff and cuda
skeldbm
Skeleton DBM scripts and dockerfiles
tangle-cnn
Automated classification/segmentation of tau tangles in IHC slides
tangle-cnn-prod
Production version of tangle cnn
tanglethon-ipynb
Jupyter notebooks for the tanglethon
tau_maps_brain_2021
Scripts for paper "Three-Dimensional Mapping of Neurofibrillary Tangle Burden in the Human Medial Temporal Lobe" at the time of submission to journal Brain
tau_recon_scripts
Scripts for 3D reconstruction of tau burden maps
template
A template Sphinx repo
tk-docker
A Dockerfile to build a container with our main utilities: c3d, greedy, and cm-rep
uclm_histo_scripts
Scripts for reconstruction of histology and blockface data collected between Penn and UCLM
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