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bsr_pipeline's Introduction

BSR_pipeline

a pipeline of BSR-seq, without parents information

原理

BSR-seq属于BSA分析方法中的一种,只不过是使用转录组测序的数据进行分析。在这里只有两个混池的转录组测序数据而缺少亲本数据,因此使用欧几里得距离(欧氏距离,Euclidean Distance,ED)进行分析,即:。同时,因为没有亲本信息,在SNP位点过滤也需要注意,首先去掉低质量位点,然后去掉两池纯和且相同的位点和存在缺失值的位点。在最后画图时可以考虑使用ED4以放大信号。

结果

查看SNP分布

SNP_distribution_histogram

ED plot

BSR_ED

ED4 plot

BSR_ED4

bsr_pipeline's People

Contributors

laowang1992 avatar

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