a pipeline of BSR-seq, without parents information
BSR-seq属于BSA分析方法中的一种,只不过是使用转录组测序的数据进行分析。在这里只有两个混池的转录组测序数据而缺少亲本数据,因此使用欧几里得距离(欧氏距离,Euclidean Distance,ED)进行分析,即:。同时,因为没有亲本信息,在SNP位点过滤也需要注意,首先去掉低质量位点,然后去掉两池纯和且相同的位点和存在缺失值的位点。在最后画图时可以考虑使用ED4以放大信号。
This project forked from biopig/bsr_pipeline
a pipeline of BSR-seq, without parents information
License: GNU General Public License v3.0
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