quvance Goto Github PK

biomarker-discovery-with-quantum-neural-networks

complex_amplitude_encoding

This repo contains the tools to generate an artifical DNA sequence, make point mutations and encode this into complex amplitudes and compare these with the quantum SWAP test.

computational_genomics

crispri-seq

Design and efficiency evaluation of genome-wide sgRNA libraries for CRISPRi-seq

deepg4_raphael_mourad

DeepG4: A deep learning approach to predict active G-quadruplexes

distillation-dnabert-promoter

Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

dnabert_2

The official implementation of DNABERT-2.

dnasequencequantumsearch

Repository for different quantum algorithms to search through genomic data

ev3_python

various python projects for the Lego EV3

ev3dev.github.io

pretty web page for ev3dev

gaas

Genome Assembly and Annotation Service code

genomebuildconversion

genomic_benchmarks

Benchmarks for classification of genomic sequences

gpn

Genomic Pre-trained Network

hawkingbot

Hawking Bot: A robot inspired by the late Stephen Hawking

hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

math-lectures

Course materials for the quantum formalism series that includes; live lecture slides, curated study materials and other useful resources.

miniconda

MINICONDA in Colab example

mistral-dna

Large language model Mistral for DNA

ncer_datasets

ncER dataset

nisq-c2qde-genomics

This repository is for the QF's pilot classical-to-quantum data encoding project for genomics data.

openai-python

The official Python library for the OpenAI API

optimal_qrc_noise

polygon

POLYGON VAE For de novo Polypharmacology

predicting-gene-expression-levels-from-dna-sequences-and-post-transcriptional-info-with-transformers

Transformers for gene expression prediction from raw dna sequences

qdnabert

qiskit-aqua

Quantum Algorithms & Applications (**DEPRECATED** since April 2021 - see readme for more info)

qiskit-textbook

qmemristor

Code base for quantum memristor