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Comments (6)

jeroen avatar jeroen commented on July 26, 2024

The problem is that mysql_config is not available on all systems. So we can add it to the configure script, but it would not make things simpler.

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jeroen avatar jeroen commented on July 26, 2024

Which operating system does this run on?

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tersmitten avatar tersmitten commented on July 26, 2024

Ubuntu 12.04

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jeroen avatar jeroen commented on July 26, 2024

Fixed @ 26dac28. Can you help test?

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tersmitten avatar tersmitten commented on July 26, 2024

Sure. I'll see if I can look into it this afternoon.

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tersmitten avatar tersmitten commented on July 26, 2024

Seems to work!

> devtools::install_github("rstats-db/RMySQL")
Downloading github repo rstats-db/RMySQL@master
Installing RMySQL
Installing dependencies for RMySQL:
DBI
Installing package into/data/home/mtersmitten/R/x86_64-pc-linux-gnu-library/3.1’
(aslibis unspecified)
trying URL 'http://cran.rstudio.com/src/contrib/DBI_0.3.1.tar.gz'
Content type 'application/x-gzip' length 30106 bytes (29 Kb)
opened URL
==================================================
downloaded 29 Kb

* installing *source* packageDBI...
** packageDBIsuccessfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (DBI)

The downloaded source packages are in/tmp/RtmpIMAxKU/downloaded_packages'/usr/lib/R/bin/R' --vanilla CMD INSTALL '/tmp/RtmpIMAxKU/devtools3aa2e8bc3ca/rstats-db-RMySQL-6a33ac7'  \
  --library='/data/home/mtersmitten/R/x86_64-pc-linux-gnu-library/3.1' --install-tests 

* installing *source* packageRMySQL...
Found mysql_config
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c RMySQL-init.c -o RMySQL-init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c connection.c -o connection.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c db-apply.c -o db-apply.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c driver.c -o driver.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c exception.c -o exception.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c fields.c -o fields.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c result.c -o result.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -g -fstack-protector --param=ssp-buffer-size=4 -Wformat-security -fPIC -g -static-libgcc -fno-omit-frame-pointer -DPERCONA_INNODB_VERSION=rel33.0  -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1     -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c utils.c -o utils.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RMySQL.so RMySQL-init.o connection.o db-apply.o driver.o exception.o fields.o result.o utils.o -L/usr/lib -lmysqlclient -lpthread -lm -lrt -lssl -lcrypto -ldl -L/usr/lib/R/lib -lR
installing to /data/home/mtersmitten/R/x86_64-pc-linux-gnu-library/3.1/RMySQL/libs
** R
** tests
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RMySQL)
> library(DBI)

>

library(DBI)

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