aldy

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

bash-handbook

:book: For those who wanna learn Bash

basic_tetris

Basic tetris is written in python and developed as a fun project

bioconda-recipes

Conda recipes for the bioconda channel.

biogpt

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bioinformatics-ca.github.io

repository for student workshop pages

biotools

A list of useful bioinformatics resources

cactus

Official home of genome aligner based upon notion of Cactus graphs

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

gc_content

GC content Calculator

graphein

Protein Graph Library

groweb

GROWeb is a user-friendly and accessible Flask application that brings the power of GROMACS simulations to the web. It allows users to design and execute molecular dynamics simulations, analyze simulation data, and visualize complex biomolecular systems in real-time.

mavis

Merging, Annotation, Validation, and Illustration of Structural variants

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

myresume

nf-core-pgxplorer

pgx_module

Anlysis of pharmacogenomic targets from Genomic Medicine Swedens heamatology panel.

pipeline_documentation

This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server for online documentation. It uses the mkdocs format, with the required "docs" folder and related files in the project root folder.

ramsainanduri

reverse_compliment

skierfe

somaticpanelpipeline

split_multi_fasta

Split multi fasta file into single fasta files

strelka

Strelka2 germline and somatic small variant caller

subset_multifasta

Subset Multi Fasta

test-datasets

Test data to be used for automated testing with the nf-core pipelines

yanagi

Transcript Segment Library Construction for RNA-Seq Quantification