Giter VIP home page Giter VIP logo

gc_content's Introduction

GC content Calculator

GC content is usually calculated as a percentage value and sometimes called G+C ratio or GC-ratio.

Why to care about GC Content?

  • The GC pair is bound by three hydrogen bonds, while AT pairs are bound by two hydrogen bonds. And so,
  • The GC content affects the stability of DNA.
  • The GC content affects the secondary structure of mRNA.
  • The GC content affects the annealing temperature for template DNA in PCR experiments.

Where to apply the GC Content?

The GC Content can be used in

  • primer design for PCR experiments
  • gene design from protein expression
  • mRNA hairpin prediction and etc.

Usage

python GC_content_calc.py /path/to/fasta/file

Example

I have provided an example file of SRY Gene in the example folder. use this file to test the script for better understanding.

gc_content's People

Contributors

ramsainanduri avatar

Watchers

 avatar  avatar

Forkers

rncassidy10

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.