Python version: | 3.5 (and 2.7 without snakemake) |
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Online documentation: | |
Issues and bug reports: | |
How to cite: | For Sequana in general including the pipelines, please use the JOSS DOI (10.21105/joss.00352) For the genome coverage tool (sequana_coverage): Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer http://biorxiv.org/content/early/2016/12/08/092478 For Sequanix: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer http://www.biorxiv.org/content/early/2017/07/12/162701 DOI: https://doi.org/10.1101/162701 |
Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship Sequanix, a graphical user interface for Snakemake pipelines.
Please see the documentation for an up-to-date status and documentation.