Robrecht Cannoodt's Projects
Grammar of Graph Graphics
:round_pushpin: Repel overlapping text labels away from each other.
Gillespie’s Stochastic Simulation Algorithm for Impatient People ⌛
GillespieSSA — Gillespie's Stochastic Simulation Algorithm (SSA)
Future
An R/C++ implementation of the Growing Neural Gas algorithm
R package: Simulate Expression data from iGraph network using mvtnorm (multivariate normal).
Easily generate information-rich, publication-quality tables from R
testing container for pushing to singularity-hub
Scripts and data to reproduce IncGraph results
⛴ Docker images, and CI builders for Jekyll.
Example Quarto repo
Visualization for TRI materials network data
Documentation that simply works
Multimodal Data (.h5mu) implementation for Python
A DSL for data-driven computational pipelines
Formalizing and benchmarking open problems in single-cell genomics
Formalizing and benchmarking open problems in single-cell genomics
Website hosted at https://openproblems.bio
Fits a Principal Curve in Arbitrary Dimension ⤵
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Parallellising lapply() by submitting them to gridengine clusters