Scripts for Epigenet. & Chromatin PMID: 32093759

This is the construction pipeline for p6mA, which is a sequence-based N⁶-methyladenine(6mA) predictor. The paper has been published in Epigenetics & Chromatin(PMID: 32093759) with title "Identification of DNA N6-methyladenine sites by integration of sequence features". According to this repository, readers can replicate all the results in the manuscript.

Before running the scripts, users need to install the feature extractor RTFE, which implements methods like EIIP/PSTNP etc. and can extract the DNA features as the input of XGboost. The RTFE only relies on 2 packages (stringr and magrittr) and is easy to install.

For 3D visualization, users also need to install rgl package.

If you have any questions, please email $ wanghaotian📧:kiz.ac.cn