rjegr Goto Github PK

2nd-workshop-in-advanced-bioinformatics

bm

notes, workflows, and parameters definition through either, metagenomic and transcriptomics procedures.

cancer_sete_t_assembly

coral_paper

1st Transcriptome analysis of Pocillopora grandis

covid_mexico_tracker

A Shinny App for tracking COVID-19 cases in Mexico.

eda-transcriptomic

It is a exploratory data analysis (EDA) dashboard than can be used at leats with an DESeqDataSet class objects and csv metadata

estadistica_uabc

Taller basado en las clases del Dr. Eduardo Santamaría del Angel, Ensenada Baja California verano 2020

fish_barcoding

Sequences resolution for fish species based on different fragments size region from the COI/COX gene

iiibss

The III Summer School in Bioinformatics, organized by the Institute of Mathematics and the Institute of Neurobiology from UNAM Juriquilla, was placed from Sunday, June 10th to Sunday, June 24th, 2018 at the Centro Académico Cultural (CAC), UNAM Juriquilla.

imipas-dataset

infovis

Dropping here some scripts in python and chunks in R than are useful for processing and visualizing data in bioinformatics

july_2018_bioinfo

This is a Rcode chunks and documentation about how to visualize data from bioinformatic source. Enjoy!

meiofauna

Database curation and data visualization support for Meiofauna metabarcoding data.

metagenomics

El enfoque del proyecto pipelines es hacer accesible al usuario el codigo y los metodos implementados para el analisis de amplicones 18s. Los metodos resuelven n perspectivas del enfoque biologico. La labor con el codigo consiste en automatizar (codigo funcionalizado y pulido) los analisis de datos 18s y CO1.

nodipecten_subnodosus

oa-research

prokaryotic-transcriptome-assembly

rjegr.github.io

sea_anemone_aiptasia_coral_symbiosis

small-rnaseq-data-analysis

templates

this is the chunck code to develope visualization (tables and plots) and stats from amplicon sequences processed by mothur and dada2 (by now)

transcriptomics

trinotate

Trinotate source code

yellowtail_microbiome_under_diets

Exploratory data analysis for 16S-metagenomic (V4 amplicon) libraries sequencing with illumina Miniseq (2x250) from intestinal (Hindgut and Foregut) microbiota of the California yellowtail (Seriola dorsalis) by consuming high concentrations of garlic (Allium sativum) as a dietary ingredient.

zoonotic_bacterial_network