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View Code? Open in Web Editor NEWDropping here some scripts in python and chunks in R than are useful for processing and visualizing data in bioinformatics
Dropping here some scripts in python and chunks in R than are useful for processing and visualizing data in bioinformatics
Hi!
I ran the annotation.R script to obtain all the Trinotate results and report.
I have no problems in most of the script, However in:
go <- split_GO(x)
I got the next error:
Error in .checkTypos(e, names_x) :
Object 'gene_ontology_BLAST' not found. Perhaps you intended gene_ontology_BLASTX, gene_ontology_BLASTP
Therefore I created function like this:
split_GO <- function(x, hit = "gene_ontology_BLASTX"){
as done in split_blast...
However it takes too long and consumes too much RAM (i am running locally) and I stopped de process
Any solution?
Thanks in advance!
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