Light

rjstevick / allnbaywildoysterscombined Goto Github PK

View Code? Open in Web Editor NEW

0.0 1.0 0.0 4.85 MB

Scripts for combined 16S analysis and Rscripts to make figures for conclusions chapter of dissertation

R 100.00%

16s-rrna qiime2 r oyster

allnbaywildoysterscombined's Introduction

Combined processed data files and Rscripts for oysters collected from all sites in Narragansett Bay.

Code written by Rebecca Stevick, URI-GSO (contact: rjstevick (at) gmail.com)

This repository contains the pre-processed sequencing data and the Rscripts to reproduce the figures in the final chapter of my dissertation. All data used has been previously published/analyzed in other chapters. This repo is mainly to save the R analysis and figure commands.

To cite this work:

Stevick, R. J. (2019). Oyster-Associated Microbial Community Dynamics (Doctoral dissertation, University of Rhode Island). https://digitalcommons.uri.edu/oa_diss/1089/

Map of dissertation study area with experimental sites highlighted:

Contents

All adult wild oyster gut samples from 7 sites

Processed data file at Order level: TNC_PJ_V6_Orderdata_edit.xlsx
Processed data file at Phyla level: TNC_PJ_V6_Phyladata_edit.xlsx
Rscript to analyze and produce figures: AllNBay_TNC_PJ_16S_analysis_FigureV2toV5.R

All oyster samples from dissertation, including larval

Processed data file at Phyla level: RWU_TNC_PJ_16S_Phyladata.xlsx
Rscript to analyze and produce figures: Conclusions_RWU_TNC_PJ_16S_analysis_FiguresV6toV8.R

allnbaywildoysterscombined's People

Contributors

Watchers

Recommend Projects

React

A declarative, efficient, and flexible JavaScript library for building user interfaces.
Vue.js

🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
TensorFlow

An Open Source Machine Learning Framework for Everyone
Django

The Web framework for perfectionists with deadlines.
Laravel

A PHP framework for web artisans
D3

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

javascript

JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
web

Some thing interesting about web. New door for the world.
server

A server is a program made to process requests and deliver data to clients.
Machine learning

Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Visualization

Some thing interesting about visualization, use data art
Game

Some thing interesting about game, make everyone happy.

Recommend Org

Facebook

We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft

Open source projects and samples from Microsoft.
Google

Google ❤️ Open Source for everyone.
Alibaba

Alibaba Open Source for everyone
D3

Data-Driven Documents codes.
Tencent

China tencent open source team.