Comments (1)
As noted in the original manuscript, the alignment and averaging process of the MNI152 led to the template being larger than the average brain. In contrast, the templates provided by SPM were designed to have an average size. A more description of the issue is Figure 1 at Horne et al. MRIcroGL is merely a visualization tool, so your question is beyond the scope of MRIcroGL. However, you could use your favorite spatial normalization tool to compute a spatial transform between these two spaces, and apply this to your data. If you constrained this to linear only transform (e.g. FSL FLIRT with 12-dof) you could get a simple 4x4 matrix that would transform any voxel from one mapping to the other.
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Related Issues (20)
- Incompatibility of v1.2.20220720 with Ubuntu 18.04 circumstance HOT 4
- Borg_Error for large t (4th dimension) nii.gz files in Windows HOT 2
- Saving T1 + spmT overlay as a single combined nifti file HOT 5
- MRIcroGL overlay render depth HOT 2
- Opening .nii files with MRIcroGL does not work: failed to load function PyLong_FromUnicode
- How to add packages to python for scripting HOT 1
- Loads blank window on startup, is this the “long wait” from the notification? HOT 4
- Affine transform show in renderer? HOT 3
- cannot install the linux version on WSL (Ubuntu) HOT 6
- Decrease line thickness in glass brain? HOT 1
- MRICroGL software query HOT 1
- MRIcroGL query HOT 1
- Creating random color look up table HOT 1
- Looking for script command for "Hide voxels with zero intensity" HOT 2
- Retain thresholds when moving across volumes of 4D NIfTI HOT 3
- [BUG] MRIcroGL shows wrong path when hovering over overlays. HOT 3
- Module not found error with scripting HOT 6
- MNI template version
- py script function bmptransparent does not work
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