rothnic / datascience-notebook Goto Github PK
View Code? Open in Web Editor NEWIPython Notebook Docker image with Anaconda Python and R
IPython Notebook Docker image with Anaconda Python and R
Hi @rothnic
Thanks for putting this together.
I pulled the latest version of rothnic/anaconda-notebook ... and was looking to extend to include R, as per this repo .. but hitting some issues, which might be resulting from this repo being out of synch with the more recently updated anaconda-notebook.
Any pointers much appreciated.
Thanks.
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#
# To activate this environment, use:
# $ source activate r
#
# To deactivate this environment, use:
# $ source deactivate
#
---> 4900f86bd8fd
Removing intermediate container 0c80587ae91b
Step 5 : RUN /tmp/setup_r.sh
---> Running in 91bde6a5155a
Traceback (most recent call last):
File "/home/condauser/anaconda3/bin/ipython", line 6, in <module>
sys.exit(start_ipython())
File "/home/condauser/anaconda3/lib/python3.4/site-packages/IPython/__init__.py", line 120, in start_ipython
return launch_new_instance(argv=argv, **kwargs)
File "/home/condauser/anaconda3/lib/python3.4/site-packages/IPython/config/application.py", line 574, in launch_instance
app.start()
File "/home/condauser/anaconda3/lib/python3.4/site-packages/IPython/terminal/ipapp.py", line 367, in start
return self.subapp.start()
File "/home/condauser/anaconda3/lib/python3.4/site-packages/IPython/kernel/kernelspecapp.py", line 142, in start
return self.subapp.start()
File "/home/condauser/anaconda3/lib/python3.4/site-packages/IPython/kernel/kernelspecapp.py", line 83, in start
replace=self.replace,
File "/home/condauser/anaconda3/lib/python3.4/site-packages/IPython/kernel/kernelspec.py", line 195, in install_kernel_spec
shutil.copytree(source_dir, destination)
File "/home/condauser/anaconda3/lib/python3.4/shutil.py", line 297, in copytree
names = os.listdir(src)
FileNotFoundError: [Errno 2] No such file or directory: '/home/condauser/anaconda3/envs/r/lib/R/library/IRkernel/kernelspec'
If you suspect this is an IPython bug, please report it at:
https://github.com/ipython/ipython/issues
or send an email to the mailing list at [email protected]
You can print a more detailed traceback right now with "%tb", or use "%debug"
to interactively debug it.
Extra-detailed tracebacks for bug-reporting purposes can be enabled via:
c.Application.verbose_crash=True
cp: cannot create regular file '/home/condauser/.ipython/kernels/ir/kernel.json': No such file or directory
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