rsuchecki Goto Github PK

hpc

ime_busco

A Docker image providing the BUSCO software

kevlar

Reference-free variant discovery in large eukaryotic genomes

kmc

Fast and frugal disk based k-mer counter

kmersgwas

A library for running k-mers based GWAS

lnisks

miniconda3

Versioned container recipes

mirage

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nektool

Cookiecutter profile for making a NextFlow-based bioinformatics tool

nexflow_version_tracking

Test Nextflow workflow which caches outputs and names according to versions of individual processes.

nextflow

A DSL for data-driven computational pipelines

nextflow-walkthrough

Nextflow code for "Implementing Scalable Bioinformatic Workflows in Snakemake and Nextflow"

nextflow_intro

Introduction to nextflow

nextflowbioinfosummer2021

nextflowcsiro2023

Nextflow tutorial at CSIRO 2023

onemetagenome

One metagenome pipeline to rule them all - this nextflow pipeline is a complete end-to-end metagenomic solution creating visualisations of taxonomic data from fastq input files, by utilising mmseq

potage

POTAGE: Popseq Ordered Triticum Aestivum Gene Expression

potage_data

Public data sets repository for POTAGE

pretzel

Javascript full-stack framework for Big Data visualisation and analysis

pretzel-data

Data structure for https://github.com/plantinformatics/pretzel

radiator

RADseq Data Exploration, Manipulation and Visualization using R

radsddrad

reproducible

repset

Reproducible aligner evaluation

rmarkdown-paper-repo

A template repo with a structure and example content for reproducible research

rmarkdown-workshop

A workshop format for rmarkdown. Releases contain locations in chronological order

setup-java

Set up your GitHub Actions workflow with a specific version of Java

slides

ad hoc slides

swc_group