Comments (4)
Maarten-vd-Sande
commented on June 18, 2024
I am also pretty sure that today I got KeyError: 'EXPERIMENT_PACKAGE' before (the key one line farther), but I guess that's related to this one
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Maarten-vd-Sande
commented on June 18, 2024
A call to efetch gave me this result, so it seems like ncbi is down-ish. Would be nice if pysradb catches this more "gracefully", but that's a minor detail.
500 Internal Server Error
No do_post output returned from 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=sra&query_key=1&WebEnv=MCID_5f6236a16761b17fe3514db7&rettype=&retmode=text&retstart=0&retmax=1&edirect_os=linux&edirect=11.0&tool=edirect&email=jenkins@ocimum'
I think I can close this as it seems something goes wrong at ncbi side?
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saketkc
commented on June 18, 2024
Thanks @Maarten-vd-Sande, this indeed is arising from NCBI (I was unable to replicate it locally just now). #69 should hopefully throw out better failure messages.
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Maarten-vd-Sande
commented on June 18, 2024
Awesome! Thanks for these fast fixes and replies ⚡ !
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Related Issues (20)
- [BUG] varying number of columns in output
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