[BUG] about pysradb HOT 4 CLOSED

Thanks for the bug report @mflynn-lanl! I suspect this is coming from a pip+conda mixup.
Note that the latest stable version of pysradb is 0.11.1. I think you have 0.9.0 installed through pip? bioconda also has the latest pysradb.

Here's a Google colab notebook for demonstration: https://colab.research.google.com/drive/15DIzoN04KeQosXSe1JRlDyKqIoKb9V-o?usp=sharing

I would suggest deleting the pysradb environment and redoing the steps:

conda env remove -n pysradb
conda create -c bioconda -n pysradb PYTHON=3 pysradb
conda activate pysradb

Newer versions of conda also support deleting automatically if you create an environment with a name that already exists.
Please feel free to reopen if you are still facing issues.

from pysradb.

I used the exact steps you suggested

from pysradb.

I was able to install the latest version using pip

from pysradb.

Thanks for the update @mflynn-lanl! I am unable to reproduce this either using pip or conda, so I will go ahead and (re)close this.

from pysradb.