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containers

Bioinformatics containers

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cromwell-monitor

Generate stats for Cromwell task calls including resource utilization & estimated costs

cromwell-sandbox

Test cromwell

cromwell-test

Trying cromwell - old

cruzdb-docker

Docker file w/ cruzdb for py27

cv

latex cv

d3js-heatmap

10 Steps to create calendar view heatmap in d3.js

d3venn

d3-venn-experiments

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deeptools

Tools to process and analyze deep sequencing data.

djangostaticfiles

Experimenting with static files in django

docker-flexbar

Dockerfile for flexbar

docker-latex

Simple docker container for building latex projects. Currently only supports PDF.

docker-pacbio

A trial docker machine with few PacBio software installed

docker-pdftk

Docker image for pdftk

docker-stacks

Opinionated stacks of ready-to-run Jupyter applications in Docker.

dreg

Detecting Regulatory Elements using GRO-seq and PRO-seq

dreg-docker

Dockfile for dREG (https://github.com/Danko-Lab/dREG)

dreg-docker-1

dreg.hd

Refining TRE regions from dREG by imputing DHS.

dreg.hd-docker

Dockerfile for dRER.HD (https://github.com/Danko-Lab/dREG.HD)

elmgrabber

Automatically exported from code.google.com/p/elmgrabber

euler

project euler solutions

evansjp-dev-box

explore-dante

f-dotfiles

Full-Fledged Über-Clean Kraymer' dotfiles (powered by stow)

faststructurequestion

Run fastSTRUCTURE on 1KG Complete Genomics samples

five-dollar-genome-analysis-pipeline

Workflows used for germline short variant discovery in WGS data

flelm

A project to find the source-organism of a flu sequence based on the specificity of functional sites.