These codes were used for analyzing the draft genome of Philornis downsi, as reported in the publication,
The genome sequence of the avian vampire fly (Philornis downsi), an invasive nest parasite of Darwin’s finches in Galápagos
Melia Romine, Sarah A. Knutie, Carly M. Crow, Grace J. Vaziri, Jaime Chaves, Jennifer A.H. Koop and Sangeet Lamichhaney
(https://www.biorxiv.org/content/10.1101/2021.06.09.447800v2)
(Disclaimer: We welcome anyone to re-use these materials. But, please note that the codes/software environment we are sharing here are specific to this project that were run in the Kent State University computer cluster