satijalab / seurat-docker Goto Github PK

> packageVersion("Seurat")
[1] ‘4.3.0’

Error: Please install the metap package to use FindConservedMarkers.
This can be accomplished with the following commands: 
----------------------------------------
install.packages('BiocManager')
BiocManager::install('multtest')
install.packages('metap')
----------------------------------------

Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
also installing the dependency ‘qqconf’

trying URL 'https://cloud.r-project.org/src/contrib/qqconf_1.2.1.tar.gz'
Content type 'application/x-gzip' length 518714 bytes (506 KB)
==================================================
downloaded 506 KB

trying URL 'https://cloud.r-project.org/src/contrib/metap_1.8.tar.gz'
Content type 'application/x-gzip' length 1097503 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

* installing *source* package ‘qqconf’ ...
** package ‘qqconf’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking for pkg-config... no
configure: error: pkg-config not found.
ERROR: configuration failed for package ‘qqconf’
* removing ‘/usr/local/lib/R/site-library/qqconf’
ERROR: dependency ‘qqconf’ is not available for package ‘metap’
* removing ‘/usr/local/lib/R/site-library/metap’

The downloaded source packages are in
	‘/tmp/RtmpICaj0f/downloaded_packages’
Warning messages:
1: In install.packages("metap") :
  installation of package ‘qqconf’ had non-zero exit status
2: In install.packages("metap") :
  installation of package ‘metap’ had non-zero exit status