scathacheng Goto Github PK

agonal-factors-project

codes for my project

asd-integration-subtypes-manuscript

atac_seq

atac_seq pipeline

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

chiasm

Detection and Quantification of circRNAs in Transcriptome Data, case Study on Honeybees

circexplorer2

circular RNA analysis toolset

circular-rna-learning

ciri-as

Docker to run CIRI-AS for splicing quantification of circular RNA

clear

direct comparison of circular and linear RNA expression

csuwgcna

dcc

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

differential-expression-analysis

drams

A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data

dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

ecatlas

english-level-up-tips-for-chinese

可能是让你受益匪浅的英语进阶指南

esccatlas

Multi-region Single-cell atlas of Esophageal Squamous Cell Carcinoma

fatools

R package for factor analysis visualization

go_mwu

Rank-based Gene Ontology analysis of gene expression data

holoflow

Bioinformatics pipeline for hologenomics data generation and analysis

knife

Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms

liger

R package for integrating and analyzing multiple single-cell datasets

mapsplice

Bioinformatics software release from Jinze Liu's Bioinformatics lab @ UKy

mrna-preprocessing

this is a preprocess code for RNA-seq from fq document to TPM/FPKM

population-compare-pipeline

Analysis pipelines for QTL discovery and GWAS signals interpretation

psychencode_data_analysis

Pipelines and Scripts used in psychENCODE project (RNA-seq, ATAC-seq)

scater

Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.

scrna-seq-analysis

use SingleCellExperiment and Scater packages to analysis single cell RNA sequencing data

shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap

single-cell-analysis