scchess / geneplotter Goto Github PK

geneplotter contains plotting functions for microarrays

 To Do:

  o A mechanism to order the rows and columns of the microarray matrix.
    order.restricted is a start. We need a mechanism for dendrograms.
    Dan Carr suggested that there was a method based on Principle components. 

  o Links to the annotation library. Using locator(1) we should be able
    to simulate interaction with the plot and look up genes at LocusLink
    etc.

  o Color scheme for Red-Blue is the same as Cheng's but the Red Green still
    looks funny.

  o Need some notion of a viewport so that we can zoom in and out. Perhaps
    Paul Murrell, Ross Ihaka or Saikat DebRoy can help out in this regard.

  o Lots of other visualization methods need to be implemented.