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docker build -t h5coro:test .
docker run --rm -it h5coro:test python -c 'import srpybin'
Traceback (most recent call last):
  File "<string>", line 1, in <module>
ImportError: /opt/conda/lib/python3.11/lib-dynload/srpybin.cpython-311-x86_64-linux-gnu.so: undefined symbol: _Z11lua_pushnilP9lua_State

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h5coro-docker's Issues

unable to import pysrbin

Traceback (most recent call last):
  File "<string>", line 1, in <module>
ImportError: /opt/conda/lib/python3.11/lib-dynload/srpybin.cpython-311-x86_64-linux-gnu.so: undefined symbol: _Z11lua_pushnilP9lua_State

@jpswinski any idea why the above error shows up? i had a quick dig online and say this, but not sure if it's related...
https://stackoverflow.com/questions/53564601/undefined-symbol-zn3a13a-when-importing-pybind11-bindings

environment:

name: base
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils=2.40=hdd6e379_0
- binutils_impl_linux-64=2.40=hf600244_0
- binutils_linux-64=2.40=hbdbef99_0
- blosc=1.21.4=h0f2a231_0
- boost-cpp=1.78.0=h6582d0a_3
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- c-compiler=1.5.2=h0b41bf4_0
- ca-certificates=2023.5.7=hbcca054_0
- cairo=1.16.0=hbbf8b49_1016
- cfitsio=4.2.0=hd9d235c_0
- cmake=3.26.4=hcfe8598_0
- curl=8.1.2=h409715c_0
- cxx-compiler=1.5.2=hf52228f_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- freexl=1.0.6=h166bdaf_1
- fribidi=1.0.10=h36c2ea0_0
- gcc=11.4.0=h7baecda_0
- gcc_impl_linux-64=11.4.0=h7aa1c59_0
- gcc_linux-64=11.4.0=hfd045f2_0
- gdal=3.7.0=py311h6122507_0
- geos=3.11.2=hcb278e6_0
- geotiff=1.7.1=h480ec47_8
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=11.4.0=h86428dc_0
- giflib=5.2.1=h0b41bf4_3
- git=2.41.0=pl5321h86e50cf_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx=11.4.0=h7baecda_0
- gxx_impl_linux-64=11.4.0=h7aa1c59_0
- gxx_linux-64=11.4.0=hfc1ae95_0
- harfbuzz=7.3.0=hdb3a94d_0
- hdf4=4.2.15=h501b40f_6
- hdf5=1.14.0=nompi_hb72d44e_103
- icu=72.1=hcb278e6_0
- json-c=0.16=hc379101_0
- kealib=1.5.1=h3845be2_3
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=h81ceb04_0
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libaec=1.0.6=hcb278e6_1
- libarchive=3.6.2=h3d51595_0
- libblas=3.9.0=17_linux64_openblas
- libcblas=3.9.0=17_linux64_openblas
- libcurl=8.1.2=h409715c_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=11.4.0=h922705a_0
- libgcc-ng=13.1.0=he5830b7_0
- libgdal=3.7.0=he76be6c_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libglib=2.76.3=hebfc3b9_0
- libgomp=13.1.0=he5830b7_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- libkml=1.3.0=h37653c0_1015
- liblapack=3.9.0=17_linux64_openblas
- libnetcdf=4.9.2=nompi_hdf9a29f_104
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.23=pthreads_h80387f5_0
- libpng=1.6.39=h753d276_0
- libpq=15.3=hbcd7760_0
- librttopo=1.1.0=h0d5128d_13
- libsanitizer=11.4.0=h4dcbe23_0
- libspatialite=5.0.1=h7d1ca68_25
- libsqlite=3.42.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=11.4.0=h922705a_0
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libtiff=4.5.0=ha587672_6
- libuuid=2.38.1=h0b41bf4_0
- libuv=1.44.2=h166bdaf_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.15=h0b41bf4_0
- libxml2=2.10.4=hfdac1af_0
- libzip=1.9.2=hc929e4a_1
- libzlib=1.2.13=hd590300_5
- lua=5.3.5=hcee41ef_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- ncurses=6.4=hcb278e6_0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numpy=1.24.3=py311h64a7726_0
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.1.1=hd590300_1
- pango=1.50.14=heaa33ce_1
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=2_h7f98852_perl5
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- poppler=23.05.0=hd18248d_1
- poppler-data=0.4.12=hd8ed1ab_0
- postgresql=15.3=h814edd5_0
- proj=9.2.0=h8ffa02c_0
- pthread-stubs=0.4=h36c2ea0_1001
- pybind11=2.10.4=py311ha3edf6b_0
- pybind11-global=2.10.4=py311ha3edf6b_0
- python=3.11.4=hab00c5b_0_cpython
- python_abi=3.11=3_cp311
- r-base=4.2.3=h4a03800_2
- r-uuid=1.1_0=r42h06615bd_1
- rapidjson=1.1.0=he1b5a44_1002
- readline=8.2=h8228510_1
- rhash=1.4.3=h166bdaf_0
- sed=4.8=he412f7d_0
- setuptools=67.7.2=pyhd8ed1ab_0
- snappy=1.1.10=h9fff704_0
- sqlite=3.42.0=h2c6b66d_0
- sysroot_linux-64=2.12=he073ed8_15
- tiledb=2.13.2=hd532e3d_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- tzcode=2023c=h0b41bf4_0
- tzdata=2023c=h71feb2d_0
- vim=9.0.1425=py311pl5321hf9d0b55_0
- wheel=0.40.0=pyhd8ed1ab_0
- xerces-c=3.2.4=h8d71039_2
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.5=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.3.0=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.2=h3eb15da_6

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