It says authorisation failed, even though I gave the right credentials.
Can you make some time to help me follow the batch processing using bashscript?
I dont know where it is going wrong.

Thank you

Dear scott:
I am an InSAR rookie, just started to get in touch with Linux,so this problem may be a kind of low-level and it is an honor to ask you questions.If you are willing to help me, I will be very very grateful.
When I installed ISCE according to your instructions"Notes for installing ISCE 2.2.0 (on Ubuntu 18.04 LTS)", I executed the command"topsApp.py --steps",then there is a parameter type error like:

File "/opt/isce-2.2.0/install/isce/applications/topsApp.py",line 901,in
insar.run()
File "/opt/isce-2.2.0/install/isce/components/iscesys/Component/Application.py",line 129,in run
exitStatus = self._processSteps()
File "/opt/isce-2.2.0/install/isce/components/iscesys/Component/Application.py",line 392,in _processSteps
result = func(*pargs,**kwargs)
File "/opt/isce-2.2.0/install/isce/components/isceobj/TopsProc/Factories.py",line 40
,in call
return self.method(self.other,*args,**kwargs)
File "/opt/isce-2.2.0/install/isce/components/isceobj/TopsProc/runPreprocessor.py",line 35,in runPreprocessor
frame.output = os.path.join(frame.output,'IW{0}'.format(swath))
File "/usr/lib/python3.6/posixpath.py",line 80,in join
a = os.fspath(a)
TypeError:expected str,bytes or os.PathLike object,not NoneType

When I run ProcessStack.py I get an error in the file "/home/geored/Software/earthdef/giant/GIAnT/tsinsar/stack.py", line 274 because the st.nanstd function does not exist.

I found that the function nanstd was a deprecated function that was removed from scipy.stats in version 0.18.0. https://stackoverflow.com/questions/40944243/module-scipy-stats-has-no-attribute-nanmean

It is necessary to adjust the isce_notes/Ubuntu/giant_102016.yml to downgrade the version of scipy.

ProcessStack.py 
logger - INFO - GIANT Toolbox - v 1.0
logger - INFO - ---------------------
<module> - INFO - Input h5file: Stack/RAW-STACK.h5
<module> - INFO - Deleting previous Stack/PROC-STACK.h5
<module> - INFO - Output h5file: Stack/PROC-STACK.h5
<module> - INFO - Using RAW Igram for GPS deramping
<module> - INFO - Taking GPS velocities from file gps_list
lltoij - INFO - Number of viable GPS: 58
lltoij - INFO - Number of GPS stations in Frame: 58
Stations:  58
<module> - INFO - Correcting RAMP using GPS
deramp_gps - INFO - Estimating ramp coefficients
/home/geored/Software/earthdef/giant/GIAnT/tsinsar/stack.py:264: VisibleDeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  Afull[:,mast*poly:(mast+1)*poly] = A
/home/geored/Software/earthdef/giant/GIAnT/tsinsar/stack.py:265: VisibleDeprecationWarning: converting an array with ndim > 0 to an index will result in an error in the future
  Afull[:,slav*poly:(slav+1)*poly] = -A
Traceback (most recent call last):
  File "/home/geored/Software/earthdef/giant/GIAnT/SCR/ProcessStack.py", line 302, in <module>
    rstack.deramp_gps(drstack,gpssar,network=netramp,neigh=gpspad,minnum=gpsmin)
  File "/home/geored/Software/earthdef/giant/GIAnT/tsinsar/stack.py", line 274, in deramp_gps
    dpherr[ppp] = st.nanstd(data.flatten())
AttributeError: 'module' object has no attribute 'nanstd'

Hello Scott,

I'm try to install giant in my ubuntu 16.04 but I have this problem: in giant.yml is not available pyproj 1.9.4 py27_1 when I tried to install I got:

NoPackagesFoundError: Package missing in current linux-64 channels:

• pyproj 1.9.4 py27_1

What can I do?
Thanks a lot

regards,
Leo Cardona

Hello Scott,

after seeing your reply in the forum i used this nice collection to install isce also on another computer.
However i noted the following:

• pyproj=1.9.4=np19py34_0

in isce.yml is not available anymore on Ubuntu Systems and anaconda will produce an error when trying to install.

regards,
Andreas

Hello, scott
when i finish step2 :
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
it prints out:
Do you wish the installer to prepend the Miniconda3 install location
to PATH in your /root/.bashrc ? [yes|no]
[no] >>> yes

Prepending PATH=/root/miniconda3/bin to PATH in /root/.bashrc
A backup will be made to: /root/.bashrc-miniconda3.bak

For this change to become active, you have to open a new terminal.

Thank you for installing Miniconda3!

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root@scott-VirtualBox:/home/scott# conda env create -f isce_201609.yml
conda: command not found
root@scott-VirtualBox:/home/scott#

conda doesn't work, do you know how to fix it ?
Thanks

Scott, Thank you for your notes of the image of ISCE, now it is easier to use it in 24 computers for teaching interferometry at the Distrital University in Bogotá.