Comments (3)
NB in order to check I change all the 0.0 in HMP.species.txt
to random values
this "fixed" the only finite values
this yield to the next error which is:
File "/opt/gensoft/exe/hclust2/1.0.0/venv/lib/python3.8/site-packages/hclust2-1.0.0-py3.8.egg/EGG-INFO/scripts/hclust2.py", line 74, in inverse
AttributeError: module 'matplotlib.cbook' has no attribute 'iterable'
regards
Eric
from hclust2.
Hey @EricDeveaud
Does anybody know how hclust2 determine the --ftop n features based on --fperc.. in the example they have used --fperc value 99 but I want to know the logic behind that. Why specifically 99? why not 100? How to decide the percentile value?
Thanks
from hclust2.
see: https://forum.biobakery.org/t/hclust2-py-error-distance-matrix-finite-values/1732/2
from hclust2.
Related Issues (10)
- IndexError with hclust2 conda environment HOT 6
- TypeError: '<' not supported between instances of 'float' and 'str' HOT 3
- ValueError: The condensed distance matrix must contain only finite values HOT 13
- Question regarding some HClust options
- Citation
- Metadata color palette
- hclust2 reported the matplotlib warning
- Italicize labels
- The condensed distance matrix must contain only finite values. in hclust2.py
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from hclust2.