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biomedr

generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.

bnt162b2

Markdown version of Reverse Engineering the source code of the BioNTech/Pfizer SARS-CoV-2 Vaccine

bookdown

R进行某些软件说明的写书的软件 Authoring Books and Technical Documents with R Markdown

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data，单细胞数据BCR序列分析

bseqsc

Bulk-Sequence Single-Cell Gene Expression Deconvolution PipelineBSeq-sc是一种生物信息学分析管道，利用单细胞测序数据来估计细胞类型比例和细胞类型特异性基因表达差异与来自大量组织样本的RNA-seq数据。

cardelino

cardelino: clone and donor identification from single-cell data，主要涉及移植供受者细胞区分，但网站信息不全，

cdna_cupcake

三代全长单细胞转录组建议Miscellaneous collection of Python and R scripts for processing Iso-Seq data

cell-ontology

单细胞分析的细胞类型鉴定An ontology of cell types

cellassign

亚群命名Automated, probabilistic assignment of cell types in scRNA-seq data

cellbench_data

This contains the dataset for comparing scRNA-seq analysis methods

cellbrowser

与cellranger官方的loupe软件类似，单细胞基因浏览器Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

cellpainting

Tools for Processing Results from CellPainting Assay

cellphonedb

细胞通讯分析官方数据包

cellprofiler-2.1.1

Copy of older version of CellProfiler

cellrouter

细胞轨迹、拟时间分析综合工具，包括基因调控Reconstruction of complex single-cell trajectories using CellRouter

cellsim

细胞相似度计算工具A software aims to calculate the similarity among different cells and predict their cell types based on networks.

cellsnp

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

cellsnp-lite

单细胞call SNP工具Efficient genotyping bi-allelic SNPs on single cells

celltagr

VDJ的clonetype分析This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

celltalker

Inference of cell-cell communication from single-cell RNAseq data

cellxgene

人单细胞图谱数据探索An interactive explorer for single-cell transcriptomics data

chemprop

通过神经网络算法预测候选药物Message Passing Neural Networks for Molecule Property Prediction

chetah

单细胞类型鉴定工具scRNA-seq cell type identification

chimeraminer

NGS嵌合reads的寻找ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing.

cibersort

cibersortx

Repository for Cibersortx

cicero-release

单细胞atac分析工具，可以做聚类 拟时间分析 基因调控关系

cite-seq-count

A tool that allows to get UMI counts from a single cell protein assay

cluster

Display on Circos the relation between differentially expressed genes and clusters found by WGCNA

clusteringmethods_single-cell_rnasquencing

不同聚类方法的比较 Master's Degree Capstone project at Weill Cornell Medicine (2017-2018)