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bioconda-recipes

Conda recipes for the bioconda channel.

bioinfo_tools

Set of basic tools for bioinformatics

biom-format

The Biological Observation Matrix (BIOM) Format Project

dada2_qiime1

Using DADA2 for to generate necessary files for QIIME 1 analyses.

fast_sparcc

A fast command line interface to find correlations in biom tables with sparCC.

fullstack-nanodegree-vm

michael_shaffercontigfilter

KBase tutorial app

microbiome_metab

Scripts for analyzing metabolism in microbiomes. Focused on the use and extension of QIIME and PICRUSt methods.

micrometab_kb

A simple website for exploration of metabolism of bacteria based on 16S sequences and the KEGG database.

pc_metadata_associations

picrust2

Code, unit tests, and tutorials for running PICRUSt2

psss-team2

q2-network

A QIIME2 plugin for basic network analyses and generating correlation networks from traditional statistics.

scnic_qiime2_workshop_sd_2018

All analyses to generate data and figures for the SCNIC talk at the 2018 QIIME2 Developers Workshop in San Diego

shafferm.github.io

spacer-seeker

A fast fuzzy string matching program for the identification and analysis of spacer origin using CRISPR and viral sequences.

virsorter

KBase integration of VirSorter

ymp