shafferm / fast_sparcc Goto Github PK

$ fast_sparCC.py -i mgrast_ssu.biom -o correls.txt --corr_only --sparcc_filter
reading in table
Table filtered: 4 observations

calculating correlations
Traceback (most recent call last):
  File "/home/blab/anaconda3/envs/sparcc/bin/fast_sparCC.py", line 4, in <module>
    __import__('pkg_resources').run_script('fast-sparCC==0.2.0', 'fast_sparCC.py')
  File "/home/blab/anaconda3/envs/sparcc/lib/python2.7/site-packages/pkg_resources/__init__.py", line 666, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/home/blab/anaconda3/envs/sparcc/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1469, in run_script
    exec(script_code, namespace, namespace)
  File "/home/blab/anaconda3/envs/sparcc/lib/python2.7/site-packages/fast_sparCC-0.2.0-py2.7.egg/EGG-INFO/scripts/fast_sparCC.py", line 60, in <module>
    
  File "/home/blab/anaconda3/envs/sparcc/lib/python2.7/site-packages/fast_sparCC-0.2.0-py2.7.egg/EGG-INFO/scripts/fast_sparCC.py", line 30, in main
    
  File "build/bdist.linux-x86_64/egg/sparcc_fast/sparcc_functions.py", line 305, in sparcc
  File "/home/blab/anaconda3/envs/sparcc/lib/python2.7/multiprocessing/pool.py", line 253, in map
    return self.map_async(func, iterable, chunksize).get()
  File "/home/blab/anaconda3/envs/sparcc/lib/python2.7/multiprocessing/pool.py", line 572, in get
    raise self._value
IndexError: tuple index out of range