gredu's Introduction
GREDU (Genome REarrangements with DUplications) is a software package implemented several exact algorithms to compute the edit distances under various evolutionaly models for two genomes with duplicate genes. Reference manual can be found at doc/manual.pdf. For any further information please contact Mingfu Shao ([email protected]).
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gredu's Issues
Failed to run example
I followed the manual, installed BOOST and GUROBI, and cloned GREDU.
But it came out error when running ./build.sh in /src.
As I only want to try segdcj, to finish the compilation:
1. I replace the file in /segdic/src as the same in rename exchange to avoid conflict
2. And add #include in /segdic/src/lpsolver.cc
3. change Makefile line 297,
"segdcj_LDADD= = -lgurobi_c++ -lgurobi"
change to
-
segdcj_LDADD= = -lgurobi_c++ -lgurobi95
So the compilation is completed, but when run
-
./segdcj human.all mouse.all 20
it throws an error:
load genomes ... alphabet size = 11235 run lpsolver ... Segmentation fault (core dumped)
I use BOOST 1.60.0 and GUROBI 951
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