pinpoint's Introduction
#======== Abstract #======== Process premature boundary prediction for DeepBound #=========== Fast install #=========== ./install_pinpoint.sh #============= Detail install #============= Execute the following commands to generate Makefile and compile:\\ aclocal autoconf autoheader automake -a ./configure make The executable file pinpoint will be present at src/. #================ Usage and example #================ Usage: The usage of pinpoint is: ./pinpoint: <sample-file> <prediction-file> <output-file> [-p probability-threshold] [-w window-size] The parameter <sample-file> specifies the sample file used for prediction (see gsamples program). The parameter <prediction-file> specifies the probability file generated by the DeepBound. The parameter <output-file> specifies the predicted boundaries: 0 for end-boundary, 1 for non-boundary, and 2 for start-boundary. The parameter [probability-threshold] is optional (default value is 0.60), which specifies the minimum average probability over a window that will be considerred as a true boundary. The parameter [window-size] is optional (default value is 10), which gives the window size. -------------------------- One-line Example: src/pinpoint example/test.ReadCount example/test.premature test.boundary
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