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cytoscape-d3-force

Description

d3-force for cytoscape.js (demo)(demo-bigdata)

Dependencies

  • Cytoscape.js ^3.2.0

Usage instructions

Download the library:

  • via npm: npm install cytoscape-d3-force,
  • via bower: bower install cytoscape-d3-force, or
  • via direct download in the repository (probably from a tag).

Import the library as appropriate for your project:

ES import:

import cytoscape from 'cytoscape';
import d3Force from 'cytoscape-d3-force';

cytoscape.use( d3Force );

CommonJS require:

let cytoscape = require('cytoscape');
let d3Force = require('cytoscape-d3-force');

cytoscape.use( d3Force ); // register extension

AMD:

require(['cytoscape', 'cytoscape-d3-force'], function( cytoscape, d3Force ){
  d3Force( cytoscape ); // register extension
});

Plain HTML/JS has the extension registered for you automatically, because no require() is needed.

API

{
  animate: true, // whether to show the layout as it's running; special 'end' value makes the layout animate like a discrete layout
  maxIterations: 0, // max iterations before the layout will bail out
  maxSimulationTime: 0, // max length in ms to run the layout
  ungrabifyWhileSimulating: false, // so you can't drag nodes during layout
  fixedAfterDragging: false, // fixed node after dragging
  fit: false, // on every layout reposition of nodes, fit the viewport
  padding: 30, // padding around the simulation
  boundingBox: undefined, // constrain layout bounds; { x1, y1, x2, y2 } or { x1, y1, w, h }
  /**d3-force API**/
  alpha: 1, // sets the current alpha to the specified number in the range [0,1]
  alphaMin: 0.001, // sets the minimum alpha to the specified number in the range [0,1]
  alphaDecay: 1 - Math.pow(0.001, 1 / 300), // sets the alpha decay rate to the specified number in the range [0,1]
  alphaTarget: 0, // sets the current target alpha to the specified number in the range [0,1]
  velocityDecay: 0.4, // sets the velocity decay factor to the specified number in the range [0,1]
  collideRadius: 1, // sets the radius accessor to the specified number or function
  collideStrength: 0.7, // sets the force strength to the specified number in the range [0,1]
  collideIterations: 1, // sets the number of iterations per application to the specified number
  linkId: function id(d) {
    return d.index;
  }, // sets the node id accessor to the specified function
  linkDistance: 30, // sets the distance accessor to the specified number or function
  linkStrength: function strength(link) {
    return 1 / Math.min(count(link.source), count(link.target));
  }, // sets the strength accessor to the specified number or function
  linkIterations: 1, // sets the number of iterations per application to the specified number
  manyBodyStrength: -30, // sets the strength accessor to the specified number or function
  manyBodyTheta: 0.9, // sets the Barnes–Hut approximation criterion to the specified number
  manyBodyDistanceMin: 1, // sets the minimum distance between nodes over which this force is considered
  manyBodyDistanceMax: Infinity, // sets the maximum distance between nodes over which this force is considered
  xStrength: 0.1, // sets the strength accessor to the specified number or function
  xX: 0, // sets the x-coordinate accessor to the specified number or function
  yStrength: 0.1, // sets the strength accessor to the specified number or function
  yY: 0, // sets the y-coordinate accessor to the specified number or function
  radialStrength: 0.1, // sets the strength accessor to the specified number or function
  radialRadius: [radius]// sets the circle radius to the specified number or function
  radialX: 0, // sets the x-coordinate of the circle center to the specified number
  radialY: 0, // sets the y-coordinate of the circle center to the specified number
  // layout event callbacks
  ready: function(){}, // on layoutready
  stop: function(){}, // on layoutstop
  tick: function(progress) {}, // on every iteration
  // positioning options
  randomize: false, // use random node positions at beginning of layout
  // infinite layout options
  infinite: false // overrides all other options for a forces-all-the-time mode
}

Build targets

  • npm run test : Run Mocha tests in ./test
  • npm run build : Build ./src/** into cytoscape-d3-force.js
  • npm run watch : Automatically build on changes with live reloading (N.b. you must already have an HTTP server running)
  • npm run dev : Automatically build on changes with live reloading with webpack dev server
  • npm run lint : Run eslint on the source

N.b. all builds use babel, so modern ES features can be used in the src.

Publishing instructions

This project is set up to automatically be published to npm and bower. To publish:

  1. Build the extension : npm run build:release
  2. Commit the build : git commit -am "Build for release"
  3. Bump the version number and tag: npm version major|minor|patch
  4. Push to origin: git push && git push --tags
  5. Publish to npm: npm publish .
  6. If publishing to bower for the first time, you'll need to run bower register cytoscape-d3-force https://github.com/shichuanpo/cytoscape.js-d3-force.git
  7. Make a new release for Zenodo.

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cytoscape.js-d3-force's Issues

锁定部分节点后全图布局时未锁定节点向同一个方向移动

你好!

我最终希望实现的效果是在原有图上添加节点,并在不改变其他节点位置的情况下仅对新增节点进行布局,目前我的做法是将原有元素锁定后再添加新节点进行布局。但是使用d3-force布局时,节点出现在大致正确的位置后会向某一个方向飘移,这个问题我基于你的demo也可以复现出来,直接点击Add nodes to random node就可以看到效果。在这样添加之后直接对所有元素进行布局,即Run layout on full graph,布局则会恢复正常。如果我把布局切换成cola,同样添加节点,则是符合我期望的效果。

期待你的回复,非常感谢!

How do i use this with react-cytoscape?

Hello, I want to ask if you know how to use this extension with react-cytoscape?

Things that I have tried:
I have included this in my source code but the graph is not showing d3-force behavior.
cytoscape.use(d3Force);

通过 layout.run 修改为其他布局时,出现怪异情况

哈哈哈 你好大佬 又是我

依赖

  • cytoscape: "^3.13.0",
  • cytoscape-d3-force: "^1.1.2"

发生了什么事
当使用该库生成 d3-force 布局时,在将布局修改成 cy.js 内置布局('cose', 'grid', 'circle')时会出现怪异情况

复现

// 1. 使用 chrome 打开 demo.html
// 2. 打开控制台输入如下,改变布局
/**
var options = {
    name: 'cose' || 'grid' || 'circle'
  }
cy.layout( options ).run()
*/
// 3.随意拖动一个节点,可发现未变成新的布局

IE控制台报错语法错误

在vue的单文件里引入:

import d3Force from "cytoscape-d3-force";
cytoscape.use(d3Force);

然后在IE启动项目后控制台打印错误:

image

如何stop掉当前布局?

如果想切换布局模式,当前force如果未stop,重新layout其他布局会出现闪现后依旧绘制当前的布局。

当布局未完成时,重新改变布局会报错

该库流畅度很高,是一个很棒的开源项目,但在使用过程遇到以下问题

依赖

  • cytoscape: "^3.13.0",
  • cytoscape-d3-force: "^1.1.0"

发生了什么事
当布局未完成 重复调用函数时,会报错 Cannot read property 'notify' of null

复现
将您仓库的 demo.html 文件 149 行 ~ 190 行拿函数包住,调用两次

 document.addEventListener('DOMContentLoaded', function () {
      function run() {
        var cy = window.cy = cytoscape({
            ...
        })
      }
      run()
      run()
  });

d3-force layout update issue

I have made a graph by using cytoscape.js-d3-force.
first time it working fine and plotting graph properly.
i want to right click on any node and get new node.
after getting this new node i have to add. i did by using cy.add({})
Now i have used
cy.layout(
name: 'd3-force',
animate: true,
fixedAfterDragging: true,
linkId: function id(d) {
return d.id;
},
linkDistance: 200,
manyBodyStrength: -300,
collideRadius: 80,
ready: function(){},
stop: function(){},
tick: function (){},
randomize: false,
infinite: true,
}).run()

I have used this for refreshing the layout. the blank screen shows. it is not refreshing actually.
can anyone help

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