Simon Steiger's Projects
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Mining Association Rules and Frequent Itemsets with R
Bayesian approach for detecting copy number alterations from single cell RNA-seq data
my own dotfile backup
A set of vim, zsh, git, and tmux configuration files.
Pandoc Data directory, including filters and templates for producing multiple outputs for academic content.
R package for detecting doublets in single-cell RNA sequencing data
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
Heidelberg MoBi Latex repro
First GitHub repo
Lint R on the fly, using lintr
R package implementation of Milo for testing for differential abundance in KNN graphs
The configuration framework for Zsh
RNA-Seq and Cell cycle annotation
R wrapper for Multicore t-SNE
R package for analyzing single-cell RNA-seq data
Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch), implementations of the method published in http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.4207.html. Also see http://biorxiv.org/content/early/2017/03/21/118901 for a description of the software.
R in a Singularity container
RStudio Server in a Singularity container
Rstudio Container based on CentOS R including a core set of important R packages in the "/library" directory of the container
A small-RNA sequencing analysis pipeline
Simple simulation of single-cell RNA sequencing data
Covseq-pipe nextflow
A collection of interactive courses for the swirl R package.
RNA velocity estimation in R