Giter VIP home page Giter VIP logo

geltools's Introduction

geltools

Compile

mkdir build
cd build
cmake ..
make

The geltools executable will appear in build/src/geltools. To run the test, one can run make test.

Example

cd build

# when the imputed data is not provided with dosage. (use --no_dosage (anything))
./src/geltools --input ../tests/winni_regression/test.vcf.gz --truth ../tests/winni_regression/truth.vcf.gz --freq ../tests/winni_regression/test_geltools.freq  --mode r2 --no_dosage x 

# when the imputed data is provided with dosage. e.g. produced by IMPUTE5 or Beagle5

./src/geltools --mode r2 --input ../tests/beagle_out_samll.vcf --truth ../tests/beagle_out2.vcf --freq ../tests/beagle_out2.af

geltools's People

Contributors

sinanshi avatar

Stargazers

Tyson Jones avatar

Watchers

James Cloos avatar  avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.