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fraxinus's Issues

How to build Fraxinus

I appreciate the effort put into both CustusX and its branches.

I am having trouble building Fraxinus. I built CustusX without any problem. However with Fraxinus

  • It is not clear if the repository has be to cloned inside the CustusX directory OR separately?
  • Within the Fraxinus build environment, how can I link the python build package from CustusX to build environment of Fraxinus?

I was wondering if the developers could help me out with this. Thank you!

Anant.

Fraxinus crashes in debug build

Hi,

I have noticed that when compiling and launching Fraxinus in Debug build, it seems to crash after clicking OK in the window below.

image

The same does not occur in Release build. Has anyone encountered this problem?



18:36:02: Starting /home/anant/dev/libs/Fraxinus/CX/build_Debug/bin/Fraxinus ...
Using paths from build folder
[18:36:02.556][0]  --- Initialize services for Fraxinus...
[18:36:02.566][0] Installing all plugins...
[18:36:02.922][0] Starting plugin org.custusx.core.video
[18:36:02.924][0] Starting plugin org.custusx.acquisition
[18:36:02.925][0] Starting plugin org.custusx.registration.method.bronchoscopy
[18:36:02.925][0] Starting plugin org.custusx.usreconstruction.pnn
[18:36:02.928][0] Starting plugin org.custusx.registration.method.centerline
[18:36:02.931][0] Starting plugin org.custusx.virtualbronchoscopy
[18:36:02.932][0] Starting plugin org.custusx.core.patientmodel
[18:36:02.937][1] UsReconstructionImplService::selectData: Invalid input data
[18:36:02.937][0] Starting plugin org.custusx.usreconstruction.vnncl
Found 1 OpenCL platforms.
1 platforms selected for inspection.
Platform 0: NVIDIA Corporation
Looking for GPU devices only.
2 devices found for this platform.
Inspecting device 0 with the name GeForce RTX 2080 Ti
The device was accepted.
Inspecting device 1 with the name GeForce RTX 2080 Ti
The device was accepted.
The platform NVIDIA CUDA was selected as the best platform.
A total of 2 devices were selected for the context from this platform:
Device 0: GeForce RTX 2080 Ti
Device 1: GeForce RTX 2080 Ti
[18:36:03.180][0] Starting plugin org.custusx.registration.method.manual
[18:36:03.182][0] Starting plugin org.custusx.core.tracking.system.igstk
[18:36:03.182][0] Starting plugin org.custusx.filter.airwaysfromcenterline
[18:36:03.182][0] Starting plugin org.custusx.filter.routetotarget
[18:36:03.184][0] Starting plugin org.custusx.core.openigtlink3
[18:36:03.187][0] Starting plugin org.custusx.filter.accusurf
[18:36:03.188][0] Starting plugin org.custusx.fraxinus.widgets
[18:36:03.189][0] Set plugin to state [INSTALLED]: org.custusx.filter.airways
[18:36:03.189][0] Starting plugin org.custusx.usreconstruction
[18:36:03.190][0] Starting plugin org.custusx.core.tracking
[18:36:03.191][0] Installing tracking system: org.custusx.core.openigtlink3
[18:36:03.191][0] Installing tracking system: org.custusx.core.tracking.system.igstk
[18:36:03.192][0] Starting plugin org.custusx.core.filemanager
[18:36:03.202][3] Adding a reader/writer: MetaImageReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: PNGImageReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: PolyDataMeshReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: XMLPolyDataMeshReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: StlMeshReader to: 0x2010230
[18:36:03.202][3] Adding a reader/writer: NIfTIReader to: 0x2010230
[18:36:03.203][3] Adding a reader/writer: MNIReaderWriter to: 0x2010230
[18:36:03.203][3] Adding a reader/writer: DICOMReader to: 0x2010230
[18:36:03.203][0] Starting plugin org.custusx.anglecorrection
[18:36:03.203][0] Starting plugin org.custusx.calibration
[18:36:03.204][0] Starting plugin org.custusx.bronchoscopynavigation
[18:36:03.206][0] Starting plugin org.custusx.registration.method.landmark
[18:36:03.207][0] Starting plugin org.custusx.registration.method.commandline
[18:36:03.208][0] Starting plugin org.custusx.registration
[18:36:03.208][0] Starting plugin org.custusx.ceetron
[18:36:03.209][3] Adding a reader/writer: CgeoReaderWriter to: 0x2010230
[18:36:03.209][0] Starting plugin org.custusx.fraxinus.core.state
[18:36:03.213][0] Found valid VLC application: /usr/bin/vlc
[18:36:03.214][0] Starting plugin org.custusx.help
[18:36:03.216][1] HelpEngine: Cannot find docFile: /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch
[18:36:03.216][1] HelpEngine: Documentation registration failed: Cannot open documentation file /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch.
[18:36:03.216][0] Starting plugin org.custusx.registration.method.vessel
[18:36:03.218][0] Starting plugin org.custusx.registration.gui
[18:36:03.219][0] Starting plugin org.custusx.registration.method.plate
[18:36:03.220][0] Starting plugin org.custusx.core.view
[18:36:03.338][0] Layout 0 changed to 3D ACS Connected
[18:36:03.338][0] Starting plugin org.custusx.training
[18:36:03.340][0] Starting plugin org.custusx.registration.method.pointcloud
[18:36:03.342][3]  --- End initialize services.
[18:36:03.804][1] HelpEngine: Cannot find docFile: /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch
[18:36:03.804][1] HelpEngine: Documentation registration failed: Cannot open documentation file /media/anant/dev/libs/Fraxinus/CX/build_Debug/doc/cx_user_doc.qch.
[18:36:04.165][3] Found 1 writers that export image
[18:36:04.168][3] Found 3 writers that export mesh
[18:36:04.170][3] Found 0 writers that export pointMetric
addAdditionalDefaultLayouts
[18:36:04.385][0] Workflow change to [New/Load Patient]
[18:36:04.435][0] Layout 0 changed to 3D
[18:36:05.743][1] [QT] QXcbConnection: XCB error: 8 (BadMatch), sequence: 2054, resource id: 100663365, major code: 130 (Unknown), minor code: 3
[18:36:05.743][1] [QT] QXcbConnection: XCB error: 8 (BadMatch), sequence: 2072, resource id: 100663365, major code: 130 (Unknown), minor code: 3
[18:36:05.743][1] [QT] QXcbConnection: XCB error: 8 (BadMatch), sequence: 2075, resource id: 100663365, major code: 130 (Unknown), minor code: 3
[18:36:09.915][3] TRYING TO LOAD DATAMETRIC WITH PATH: /home/anant/Patients/Bronchoscopy/NAV_2.cx3/.
[18:36:09.915][3] Sym: 0
[18:36:09.915][3] Dir: 1
[18:36:09.915][3] File: 0
[18:36:09.915][3] does not exist
[18:36:09.941][3] TRYING TO LOAD DATAMETRIC WITH PATH: /home/anant/Patients/Bronchoscopy/NAV_2.cx3/.
[18:36:09.941][3] Sym: 0
[18:36:09.941][3] Dir: 1
[18:36:09.941][3] File: 0
[18:36:09.941][3] does not exist
qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.qSetGlobalQHashSeed: forced seed value is not 0, cannot guarantee that the hashing functions will produce a stable value.terminate called after throwing an instance of 'ctkPluginDatabaseException'
  what():  ctkPluginDatabaseException: Problem closing database: Invalid connection plugins
18:36:17: The program has unexpectedly finished.
18:36:17: The process was ended forcefully.
18:36:17: /home/anant/dev/libs/Fraxinus/CX/build_Debug/bin/Fraxinus crashed.

Anant.

Build instruction needed

Hi developers,

I am new to open source software, and can anyone tell me how to build Fraxinus?

What I have done:
Custusx -- Downloaded & Build

What I want to know:

  1. which directory should I use for Fraxinus? For example, my Custusx path is ~/dev/cx/CX/CX/, and I run ./install/cxInstaller.py --full --all --build_type Release --user_doc to install Custusx.
  2. what command should I type to install Fraxinus?

My environment is: Ubuntu 16.04.

Thanks.

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