Name: Shaun Jackman
Type: User
Company: @10xGenomics
Bio: I am a computational biologist (PhD), a developer of Cell Ranger and Homebrew, an open-source programmer, an avid traveller, a singer, and an enthusiastic cook.
Twitter: sjackman
Location: Vancouver, Canada
Blog: https://sjackman.ca
Shaun Jackman's Projects
A Nextflow pipeline assembler for genomics :whale::package:
:microscope::books: Galaxy Tool wrappers
GenomeTools genome analysis system.
Graphical Fragment Assembly (GFA) Format Specification
Library and command-line tool to manipulate assembly graph in the GFA format
:microscope: Graphical Fragment Assembly (GFA) 2.0
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
Check a GFA file for syntax errors
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Convert a GFF3 file to a format acceptable for submission to EMBL
Teaching materials for the R package ggplot2
Assembling the Genome in a Bottle sequencing data with ABySS
A golang formatter that fixes long lines
GenomeTools Lua userscripts.
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
Using Git and GitHub with R, Rstudio, and R Markdown
Science formulae for the Linuxbrew and Homebrew package managers
:beer::microscope::penguin: Bioinformatics formulae for the Linuxbrew package manager
:package: Bundler for non-Ruby dependencies from Homebrew
a friendly homebrew-style CLI workflow for the administration of Mac applications distributed as binaries
π» Default formulae for the missing package manager for macOS
Searchable descriptions for Homebrew formulas
:two_women_holding_hands: System duplicate formulae for the Homebrew package manager
:lollipop::penguin: Linux-only formulae that are not dependencies of core formulae
π Formula of οΌ¦π
Ύπππ (fork of Caskroom-fonts)
:wrench::penguin: Tools for Linuxbrew developers