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Cryptic Neo-antigen finder
Autogenerated requirements.txt seems to break.
Use the following instead:
tqdm=4.64.0
numpy=1.22.3
pandas=1.4.2
biopython=1.79
(Will be updated later)
It's better to use
, instead of neoPipe, this way people know better that this name can be changed.Code snippet that executes the R script hasn't been depersonalized yet.
Instead of having a fixed path, it should be changed to a dynamic path for the user.
This Warning originates from >Peptide_selection.py >peptide_filtering() >line58
The inplace should be changed to:
df = df.sort_values(by=['%Rank_EL'])
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