Name: Sehrish Kanwal
Type: User
Company: The University of Melbourne
Bio: Bioinformatics scientist at the University of Melbourne Centre for Cancer Research
Twitter: Dr_Sehrish_K
Location: Melbourne, Australia
Blog: https://www.linkedin.com/in/dr-sehrish-kanwal-1b80bb42/
Sehrish Kanwal's Projects
Carpentries exercise
Workshop material
Modified version of Pro Git
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Compare validation outputs from bcbio against existing truth sets
Conda recipes for the bioconda channel.
The Blair Walden Project: in 1845 Henry David Thoreau went to live in the woods... a year later his journal was found.
A simple python calculator
GATK Variant Calling Workflow using Galaxy, CWL and Cpipe
Scripts for creating flavours of Cpipe and LOVD for the GVL
Web application to collect and visualise data across multiple MultiQC runs.
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
https://c-big.github.io/NPM-sample-qc
The expert in anything was once a beginner!!!
Tool Shed repositories maintained by the Intergalactic Utilities Commission
Bcbio results umccrization
A tool to compare variants contained within multiple vcf format files, to determine common and unique variants to each file. To write these variants to a new file also in vcf format.
Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results
Community maintained workflows & tools (with examples)