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skjq's Projects

handson-ml icon handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

hotmaps icon hotmaps

Detects hotspot regions for somatic mutations in 3D protein structures

inwtutils icon inwtutils

R package with utility functions used by INWT Statistics

labs icon labs

Rmd source files for the HarvardX series PH525x

mat2vec icon mat2vec

Supplementary Materials for Tshitoyan et al. "Unsupervised word embeddings capture latent knowledge from materials science literature", Nature (2019).

matlabtfce icon matlabtfce

Standalone MATLAB implementation of permutation TFCE correction

microbemiseq icon microbemiseq

Set of useful functions and scripts for analyzing amplicon Miseq data.

microber icon microber

Handy tools for Microbiome analysis in R

microbiomeexplorer icon microbiomeexplorer

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.

netcomi icon netcomi

Network Comparison for Microbial Compositional Data

netnmf-sc icon netnmf-sc

netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data

poofsi icon poofsi

:zap: Learn concepts from Nature Methods' series "Points of Significance"

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